Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f03f
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas... 269 1e-72
At1g16300.1 68414.m01951 glyceraldehyde 3-phosphate dehydrogenas... 268 3e-72
At1g13440.1 68414.m01570 glyceraldehyde 3-phosphate dehydrogenas... 248 2e-66
At3g04120.1 68416.m00436 glyceraldehyde-3-phosphate dehydrogenas... 248 3e-66
At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas... 171 3e-43
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 166 1e-41
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 163 9e-41
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 29 2.7
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 29 2.7
At2g44030.1 68415.m05474 kelch repeat-containing F-box family pr... 29 2.7
At4g01330.1 68417.m00173 protein kinase family protein contains ... 29 3.5
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 29 3.5
At1g21440.1 68414.m02681 mutase family protein similar to carbox... 28 4.7
At4g24830.1 68417.m03557 arginosuccinate synthase family contain... 27 8.2
At3g63330.1 68416.m07125 protein kinase family protein contains ... 27 8.2
>At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative
similar to glyceraldehyde-3-phosphate dehydrogenase
[Pinus sylvestris] GI:1100223; contains Pfam profiles
PF02800: Glyceraldehyde 3-phosphate dehydrogenase
C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 422
Score = 269 bits (659), Expect = 1e-72
Identities = 127/184 (69%), Positives = 148/184 (80%), Gaps = 2/184 (1%)
Frame = +3
Query: 84 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV- 257
+K+GINGFGRIGRLVLR A+ +VVA+NDPFI YM Y+ KYDSTHG FKGS+ V
Sbjct: 87 TKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMLKYDSTHGNFKGSINVI 146
Query: 258 QDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIIS 437
D L +NG K+ V S+RDP IPW GA+YVVES+GVFTT KA++HL+GGAKKVIIS
Sbjct: 147 DDSTLEINGKKVNVVSKRDPSEIPWADLGADYVVESSGVFTTLSKAASHLKGGAKKVIIS 206
Query: 438 APSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTVHATT 617
APSADAPMFVVGVN Y P+ ++SNASCTTNCLAPLAKV+H+ F I+EGLMTTVHATT
Sbjct: 207 APSADAPMFVVGVNEHTYQPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATT 266
Query: 618 ATQK 629
ATQK
Sbjct: 267 ATQK 270
>At1g16300.1 68414.m01951 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative
similar to glyceraldehyde-3-phosphate dehydrogenase
[Pinus sylvestris] GI:1100223; contains Pfam profiles
PF02800: Glyceraldehyde 3-phosphate dehydrogenase
C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 420
Score = 268 bits (656), Expect = 3e-72
Identities = 126/184 (68%), Positives = 150/184 (81%), Gaps = 2/184 (1%)
Frame = +3
Query: 84 SKIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV- 257
+K+GINGFGRIGRLVLR A+ +VVA+NDPFI YM Y+FKYDSTHG +KG++ V
Sbjct: 85 TKVGINGFGRIGRLVLRIATFRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNYKGTINVI 144
Query: 258 QDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIIS 437
D L +NG ++ V S+RDP IPW GAEYVVES+GVFTT +AS+HL+GGAKKVIIS
Sbjct: 145 DDSTLEINGKQVKVVSKRDPAEIPWADLGAEYVVESSGVFTTVGQASSHLKGGAKKVIIS 204
Query: 438 APSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTVHATT 617
APSADAPMFVVGVN + Y P+ ++SNASCTTNCLAPLAKV+H+ F I+EGLMTTVHATT
Sbjct: 205 APSADAPMFVVGVNEKTYLPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATT 264
Query: 618 ATQK 629
ATQK
Sbjct: 265 ATQK 268
>At1g13440.1 68414.m01570 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative very
strong similarity to SP|P25858 Glyceraldehyde
3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 338
Score = 248 bits (608), Expect = 2e-66
Identities = 120/190 (63%), Positives = 150/190 (78%), Gaps = 3/190 (1%)
Frame = +3
Query: 69 LADNMSKIGINGFGRIGRLVLRASIEKG-AQVVAINDPFIGLDYMVYLFKYDSTHGRFKG 245
+AD +IGINGFGRIGRLV R +++ ++VA+NDPFI +YM Y+FKYDS HG++K
Sbjct: 1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKH 60
Query: 246 -SVEVQDGFLVVNGNK-IAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGA 419
++V+D ++ G K + VF R+P+ IPWG+AGA++VVESTGVFT DKA+AHL+GGA
Sbjct: 61 HELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGA 120
Query: 420 KKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMT 599
KKV+ISAPS DAPMFVVGVN Y ++SNASCTTNCLAPLAKVI+D F IVEGLMT
Sbjct: 121 KKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMT 180
Query: 600 TVHATTATQK 629
TVH+ TATQK
Sbjct: 181 TVHSITATQK 190
>At3g04120.1 68416.m00436 glyceraldehyde-3-phosphate dehydrogenase,
cytosolic (GAPC) / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase identical to
SP|P25858 Glyceraldehyde 3-phosphate dehydrogenase,
cytosolic (EC 1.2.1.12) {Arabidopsis thaliana}
Length = 338
Score = 248 bits (606), Expect = 3e-66
Identities = 119/190 (62%), Positives = 149/190 (78%), Gaps = 3/190 (1%)
Frame = +3
Query: 69 LADNMSKIGINGFGRIGRLVLRASIEKG-AQVVAINDPFIGLDYMVYLFKYDSTHGRFK- 242
+AD +IGINGFGRIGRLV R +++ ++VA+NDPFI +YM Y+FKYDS HG++K
Sbjct: 1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKH 60
Query: 243 GSVEVQDGFLVVNGNK-IAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGA 419
++++D ++ G K + VF R+P+ IPW +AGA+YVVESTGVFT DKA+AHL+GGA
Sbjct: 61 NELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGA 120
Query: 420 KKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMT 599
KKV+ISAPS DAPMFVVGVN Y ++SNASCTTNCLAPLAKVI+D F IVEGLMT
Sbjct: 121 KKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMT 180
Query: 600 TVHATTATQK 629
TVH+ TATQK
Sbjct: 181 TVHSITATQK 190
>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
chloroplast, putative / NADP-dependent
glyceraldehydephosphate dehydrogenase, putative similar
to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
chloroplast precursor (EC 1.2.1.13) (NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A)
{Arabidopsis thaliana}; contains Pfam profiles PF02800:
Glyceraldehyde 3-phosphate dehydrogenase C-terminal
domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 399
Score = 171 bits (416), Expect = 3e-43
Identities = 92/188 (48%), Positives = 115/188 (61%), Gaps = 5/188 (2%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRA---SIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 257
K+ INGFGRIGR LR + VV IND G+ +L KYDST G F V+
Sbjct: 66 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSTLGIFDADVKP 124
Query: 258 Q-DGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVII 434
D L V+G I + S+R+P +PWG+ G + V+E TGVF D A HL+ GAKKV+I
Sbjct: 125 SGDSALSVDGKIIKIVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 184
Query: 435 SAPS-ADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTVHA 611
+AP D P +VVGVN E Y +ISNASCTTNCLAP KV+ F I++G MTT H+
Sbjct: 185 TAPGKGDIPTYVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 244
Query: 612 TTATQKLL 635
T Q+LL
Sbjct: 245 YTGDQRLL 252
>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
A, chloroplast (GAPA) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A
identical to SP|P25856 Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit A) {Arabidopsis thaliana}
Length = 396
Score = 166 bits (403), Expect = 1e-41
Identities = 89/188 (47%), Positives = 115/188 (61%), Gaps = 5/188 (2%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRA---SIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 257
K+ INGFGRIGR LR + ++AIND G+ +L KYDST G F V+
Sbjct: 63 KVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDADVKP 121
Query: 258 Q-DGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVII 434
+ + V+G I V S R+P +PW + G + V+E TGVF + A H+E GAKKVII
Sbjct: 122 SGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVII 181
Query: 435 SAPS-ADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTVHA 611
+AP D P +VVGVN +AY +ISNASCTTNCLAP KV+ F I++G MTT H+
Sbjct: 182 TAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 241
Query: 612 TTATQKLL 635
T Q+LL
Sbjct: 242 YTGDQRLL 249
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 163 bits (396), Expect = 9e-41
Identities = 90/190 (47%), Positives = 117/190 (61%), Gaps = 7/190 (3%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRA---SIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 257
K+ INGFGRIGR LR + +VV +ND G+ +L KYDS G FK V++
Sbjct: 83 KVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSG-GVKNASHLLKYDSMLGTFKAEVKI 141
Query: 258 QDGFLV-VNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVII 434
D + V+G I V S RDP +PW + G + V+E TGVF A H++ GA KVII
Sbjct: 142 VDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVII 201
Query: 435 SAPS--ADAPMFVVGVNLEAYDPSF-KVISNASCTTNCLAPLAKVIHDXFEIVEGLMTTV 605
+AP+ AD P +V+GVN + Y +ISNASCTTNCLAP AKV+ + F IV+G MTT
Sbjct: 202 TAPAKGADIPTYVMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTT 261
Query: 606 HATTATQKLL 635
H+ T Q+LL
Sbjct: 262 HSYTGDQRLL 271
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 96 INGFGRIGRLVLRASIEKGAQVVAIND 176
I GFG +G + EKG ++VA++D
Sbjct: 211 IQGFGNVGSWAAKLISEKGGKIVAVSD 237
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 96 INGFGRIGRLVLRASIEKGAQVVAIND 176
I GFG +G + EKG +VVA++D
Sbjct: 211 IQGFGNVGTWAAKLIHEKGGKVVAVSD 237
>At2g44030.1 68415.m05474 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 380
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 121 VWCSVLLLKRELKWSL*MTLSSVLTI 198
+WC+++LL+REL W + +V T+
Sbjct: 331 IWCALILLERELVWGVIEWSENVFTL 356
>At4g01330.1 68417.m00173 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 329
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -2
Query: 197 IVKTDERVIYSDHLSSLFNRSTEHQTANAAKS 102
I KT+ RV++SD +SS +R T +TA+ + S
Sbjct: 103 IGKTEHRVVFSDRVSSGESRGTVSETASYSGS 134
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRASIEKGAQVVAIND 176
+ I GFG +G + +KG ++VA++D
Sbjct: 208 RFAIQGFGNVGSWAAKLISDKGGKIVAVSD 237
>At1g21440.1 68414.m02681 mutase family protein similar to
carboxyvinyl-carboxyphosphonate phosphorylmutase
GB:O49290 from [Arabidopsis thaliana]; similar to
carboxyphosphonoenolpyruvate mutase (GI:47149)
[Streptomyces hygroscopicus]; contains Prosite PS00161:
Isocitrate lyase signature
Length = 336
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 336 KAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAY 491
+ A + TG+ D+A+ ++E GA + AP D + +G + Y
Sbjct: 191 RTDARALSAKTGLSDAIDRANLYMEAGADASFVEAPRDDDELKEIGRRTKGY 242
>At4g24830.1 68417.m03557 arginosuccinate synthase family contains
Pfam profile: PF00764 arginosuccinate synthase
Length = 494
Score = 27.5 bits (58), Expect = 8.2
Identities = 29/99 (29%), Positives = 41/99 (41%)
Frame = +3
Query: 354 VVESTGVFTTTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTT 533
V+ G TTD A L G KKV+++ + G++ P K N C
Sbjct: 75 VLSGDGTALTTDSKEAGLRGKLKKVVLA--------YSGGLDTSVIVPWLK--ENYGCEV 124
Query: 534 NCLAPLAKVIHDXFEIVEGLMTTVHATTATQKLLMDLLE 650
C A V E+ EGL A+ A+Q ++ DL E
Sbjct: 125 VCFT--ADVGQGIKEL-EGLEQKAKASGASQLVVKDLTE 160
>At3g63330.1 68416.m07125 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 376
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 370 VSLPLQIKHLLTWREVLKKLLYQLPVLMPPCLL 468
V+ L +H+ W E K+L Y+L LM C+L
Sbjct: 262 VTRALLDQHIRGWSENFKELAYKLRSLMEMCIL 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,777,801
Number of Sequences: 28952
Number of extensions: 317683
Number of successful extensions: 988
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -