Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12f02r
(349 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58440| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81) 28 2.4
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44) 28 2.4
SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08) 27 4.2
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 26 7.3
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_40209| Best HMM Match : Ank (HMM E-Value=0) 26 9.7
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 26 9.7
SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 26 9.7
>SB_58440| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81)
Length = 427
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 337 TGFRPEIS*GKSK*SEQLQGFPTG 266
TGFRPE S G ++ SE L GF G
Sbjct: 369 TGFRPEYSQGSAQ-SESLNGFTDG 391
>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 201 LPGNTAVGSTPNTGLYDILPNGPVGN-PCNCSDHFDFP 311
LP T S PNT Y+ LPN N P N + H P
Sbjct: 50 LPNTTRHNSLPNTTRYNSLPNTTRHNSPPNTTRHNSLP 87
>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
Length = 230
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 274 PTGPLGRMS*RPVLGVDPTAVFPGRICHSTSIIRLA*PSTCSGSSAADLQHPSLLCGIR* 95
PTG G + +P + PT + G +C S + S C+ + ++ P LCG+
Sbjct: 147 PTGT-GTPTRKPEPTLSPTRMLSGLLCQSFVV------SLCTRQDTSGMEQPCDLCGLNI 199
Query: 94 GR 89
G+
Sbjct: 200 GK 201
>SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08)
Length = 349
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = -3
Query: 284 ARISNRTVGKNVVKTSVRSGSNGGIPGENLPFDINNKARLTFHMFWFFGSGFAAPFLVVW 105
A +SN VG+N ++T I N P + L + FA P+++
Sbjct: 278 ALVSNVKVGRNFLRTRTIVAKPTDIAHPNFPRSCGDPTNLLEWCLYLTACFFALPYMLHL 337
Query: 104 HQMRKN 87
++R N
Sbjct: 338 EEVRTN 343
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 664 TLIPSISTSILPHNTTVIATPNT 686
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 61 TLIPSISTSILPYNTTVIATPNT 83
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 262 TLIPSISTSILPYNTTVIATPNT 284
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 463 TLIPSISTSILPYNTTVIATPNT 485
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 151 TLIPSISTSILPYNTTVIATPNT 173
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 352 TLIPSISTSILPYNTTVIATPNT 374
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 553 TLIPSISTSILPYNTTVIATPNT 575
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 754 TLIPSISTSILPYNTTVIATPNT 776
>SB_40209| Best HMM Match : Ank (HMM E-Value=0)
Length = 885
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 102 MPHNKEGCCKSAAEEPEHVEGQASLII-DVEWQILPGNTAVGSTPNTGLYDILPN 263
M + + C A + E E +LI D W+++ + G P GL + LP+
Sbjct: 467 MRNKDDKTCLDVAIDWERTEVAKALIQHDRWWEVMCTRNSAGELPMVGLIEALPD 521
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 151 TLIPSISTSILPYNTTVIATPNT 173
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 352 TLIPSISTSILPYNTTVIATPNT 374
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 553 TLIPSISTSILPYNTTVIATPNT 575
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 754 TLIPSISTSILPYNTTVIATPNT 776
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 955 TLIPSISTSILPYNTTVIATPNT 977
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 1357 TLIPSISTSILPYNTTVIATPNT 1379
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 1759 TLIPSISTSILPYNTTVIATPNT 1781
>SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 159 EGQASLIIDVEWQILPGNTAVGSTPNTGLYDIL 257
+G+ S ++ +W G G TP+ G+Y L
Sbjct: 181 QGEVSFSLNGDWSSPMGTAFTGITPDGGIYPCL 213
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 134 TLIPSISTSILPYNTTVIATPNT 156
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 171 SLIIDVEWQILPGNTAVGSTPNT 239
+LI + ILP NT V +TPNT
Sbjct: 335 TLIPSISTSILPYNTTVIATPNT 357
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,059
Number of Sequences: 59808
Number of extensions: 205787
Number of successful extensions: 468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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