Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f02r
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.19 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.19
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 254  NVVKTSVRSGSNGGIPGENLPFDINNKARLTFHMFWFFGSGFAAPF 117
            NV+K +  SG+       +  F +N+  RLTF        GF  PF
Sbjct: 941  NVIKLTKTSGTVQAQINPDFAFIVNSNLRLTFSKNVQGRVGFVTPF 986


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 246 YDILPNGPVGNPCNCSDHFDFP*LISGLN 332
           +D+LP+ P       SD+F F  L + LN
Sbjct: 264 WDVLPHPPYSPDLAPSDYFLFRSLQNSLN 292


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 239 SVRSGSNGGIPGENLPFDIN 180
           +++SGS   IPG +LP D++
Sbjct: 46  AIKSGSY--IPGASLPIDVD 63


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 248 VKTSVRSGSNGGIPGENLPFDINNK 174
           +KT + +G N  IP E    + N+K
Sbjct: 304 IKTELSTGMNDDIPPETEEEEENDK 328


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 276 FQQDRWEECRK 244
           + +DRWEE R+
Sbjct: 17  YGEDRWEEIRR 27


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 198 ILPGNTAVGSTPNTGLYDILPNGPVG 275
           ++ GN+   +T   G+YDIL    +G
Sbjct: 367 VIEGNSDSINTKFYGMYDILARDILG 392


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 267  PVGNPCNCSDH 299
            PVG+P N S H
Sbjct: 1762 PVGHPTNASAH 1772


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,013
Number of Sequences: 438
Number of extensions: 2054
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)