Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f02r
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01700.1 68417.m00221 chitinase, putative similar to peanut t...    28   1.5  
At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to ...    28   2.0  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    27   3.4  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    26   6.0  
At1g43777.1 68414.m05042 hypothetical protein                          26   6.0  
At5g13810.1 68418.m01613 glutaredoxin family protein                   26   7.9  
At4g17800.1 68417.m02656 DNA-binding protein-related contains Pf...    26   7.9  

>At4g01700.1 68417.m00221 chitinase, putative similar to peanut type
           II chitinase GI:1237025 from [Arachis hypogaea]
          Length = 280

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 281 RISNRTVGKNVVKTSVRSGSNGGIPGE 201
           R +NRTVG  +V   +  G   GIPG+
Sbjct: 220 RAANRTVGYGLVTNIINGGLECGIPGD 246


>At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 389

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 174 LIIDVEWQI-LPGNTAVGSTPNTGLYDILPNGPVGN 278
           L+ + EW+I LPG  A+       +  I PN P GN
Sbjct: 178 LLPEKEWEIDLPGIEAMADENTVAMVIINPNNPCGN 213


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 105 PHNKEGCCKSAAEEPEHVEGQASLIIDVEWQ 197
           P N  GC ++  +EPE + G +S  + VE Q
Sbjct: 814 PPNPSGCARTGRKEPEALAGASSKRLFVENQ 844


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 114 KEGCCKSAAEEPEHVEGQASLIIDVEWQILPG 209
           K+G C +       V GQA L+I + W  L G
Sbjct: 78  KKGACDTGNAGSASVPGQALLLIHIVWLFLLG 109


>At1g43777.1 68414.m05042 hypothetical protein
          Length = 241

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 337 TGFRPEIS*GKSK*SEQLQGFPTGPLGRMS 248
           T + P+I+   ++ +E LQGF + P GR+S
Sbjct: 82  TSYYPKIAKDHAEIAEDLQGFLSYPWGRLS 111


>At5g13810.1 68418.m01613 glutaredoxin family protein
          Length = 274

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 208 PGRICHSTSIIRLA*PSTCSGS 143
           PG +CH    IR    S CSGS
Sbjct: 223 PGFVCHCCGDIRFVPCSNCSGS 244


>At4g17800.1 68417.m02656 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 292

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 236 VRSGSNGGIPGENLPFDINNKARLTFHMFWFFGSGFAAPF 117
           V +G  GG+P  NLP ++    +L     W   SG   PF
Sbjct: 254 VAAGGGGGLPFFNLPMNMQPNVQLPVE-GWPGNSGGRGPF 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,437,416
Number of Sequences: 28952
Number of extensions: 145701
Number of successful extensions: 348
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)