Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f02f
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc...    34   0.009
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    27   1.1  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    27   1.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   3.3  

>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
           VIII|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 66

 Score = 33.9 bits (74), Expect = 0.009
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 141 PGENLPFDINNKARLTFHMFWFFGSGFAAPFLVVWHQMR 257
           PG  +PF IN K   T   F  FG  F+ PF+VV +  R
Sbjct: 26  PGSTIPFYINKKPLPTLLYFGTFGVIFSIPFIVVKYHNR 64


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +3

Query: 75  SNRTVGKNVVKTSVRSGSNGGIPG-----ENLPFDINNKARLTF 191
           SN TVG NV  T+  S  +GG P       + P D N   RL +
Sbjct: 38  SNITVGVNVTNTTAFSKRDGGFPDGVYDCSSFPDDQNGVVRLDY 81


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 120 SGSNGGIPGENLPFDINNKARLTFHMFWFFGSGFAAPFLVVWHQMRKNSNS*I*NGNLTH 299
           +GS+  +P   LP  I NK  L + ++W   +GF +  L+   +   + N+ + +G   H
Sbjct: 55  TGSDA-LPKALLP--IGNKPMLHYPLYWLEAAGFTSAILICMEEAEAHINAWLRSGYEGH 111


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 42   KIKMIGAVARISNRTVGKNVVKTSVRSGSNGGIPGENLPFDINNKARLTF 191
            +++ IGA+   S+   G   V ++VR   N G+ G +L + +     LTF
Sbjct: 1131 RVEAIGALVVFSSAFFG---VLSAVRGNPNSGLVGLSLSYAVQITQSLTF 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,312
Number of Sequences: 5004
Number of extensions: 29664
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)