Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12f02f
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58440| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81)           28   3.3  
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)                      28   3.3  
SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08)                   27   5.7  
SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)          27   7.6  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      26   10.0 

>SB_58440| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81)
          Length = 427

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 13  TGFRPEIS*GKSK*SEQLQGFPTG 84
           TGFRPE S G ++ SE L GF  G
Sbjct: 369 TGFRPEYSQGSAQ-SESLNGFTDG 391


>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 149 LPGNTAVGSTPNTGLYDILPNGPVGN-PCNCSDHFDFP 39
           LP  T   S PNT  Y+ LPN    N P N + H   P
Sbjct: 50  LPNTTRHNSLPNTTRYNSLPNTTRHNSPPNTTRHNSLP 87


>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
          Length = 230

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 76  PTGPLGRMS*RPVLGVDPTAVFPGRICHSTSIIRLA*PSTCSGSSAADLQHPSLLCGIR* 255
           PTG  G  + +P   + PT +  G +C S  +      S C+    + ++ P  LCG+  
Sbjct: 147 PTGT-GTPTRKPEPTLSPTRMLSGLLCQSFVV------SLCTRQDTSGMEQPCDLCGLNI 199

Query: 256 GR 261
           G+
Sbjct: 200 GK 201


>SB_36004| Best HMM Match : Ank (HMM E-Value=1.8e-08)
          Length = 349

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/66 (24%), Positives = 27/66 (40%)
 Frame = +3

Query: 66  ARISNRTVGKNVVKTSVRSGSNGGIPGENLPFDINNKARLTFHMFWFFGSGFAAPFLVVW 245
           A +SN  VG+N ++T         I   N P    +   L     +     FA P+++  
Sbjct: 278 ALVSNVKVGRNFLRTRTIVAKPTDIAHPNFPRSCGDPTNLLEWCLYLTACFFALPYMLHL 337

Query: 246 HQMRKN 263
            ++R N
Sbjct: 338 EEVRTN 343


>SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)
          Length = 240

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 374 YLRFHLHKYKSIVNFIHSGL 315
           YLR H+H Y SI+  ++S L
Sbjct: 169 YLRLHIHDYISILTSLYSSL 188


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 179 SLIIDVEWQILPGNTAVGSTPNT 111
           +LI  +   ILP NT V +TPNT
Sbjct: 664 TLIPSISTSILPHNTTVIATPNT 686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,622
Number of Sequences: 59808
Number of extensions: 230294
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)