Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e24r
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489... 36 0.040
01_01_0909 - 7163886-7163931,7164148-7164254,7164370-7164435,716... 33 0.16
01_06_0268 - 28026512-28026682,28026782-28026919,28027151-280273... 32 0.37
01_01_0244 - 2005152-2005649,2006186-2006254 32 0.49
06_03_0778 - 24523780-24526353 31 0.85
03_06_0745 + 35937173-35938256,35938994-35939721 31 0.85
09_02_0147 - 4968360-4969151,4969959-4970369,4970856-4970921,497... 30 1.5
11_02_0006 + 7274148-7274986,7275636-7277586 30 2.0
08_02_1438 + 27108359-27108889 30 2.0
08_02_1433 - 27063626-27064135 29 2.6
01_06_0808 + 32134765-32136570 29 2.6
11_01_0631 - 5063622-5063635,5065050-5065203,5065280-5065441,506... 29 3.4
12_02_0502 - 19746100-19746185,19746745-19750474 28 6.0
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 6.0
04_04_1388 - 33179270-33180679 28 6.0
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 28 6.0
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 28 7.9
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 28 7.9
>03_05_0996 -
29547974-29547977,29548442-29548620,29548827-29548905,
29549556-29549577,29550370-29550439,29550589-29550667,
29551252-29551268,29552214-29552295,29553540-29553630,
29554354-29554498,29554653-29554964
Length = 359
Score = 35.5 bits (78), Expect = 0.040
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -1
Query: 277 RWCMTPL-VASVPPLSVSTILTTPKRRLAICSSAQTVAAITTHSTGWGGNLIASTSAIA 104
R+ TPL +A+ PPLSV +I P+ R+ +A I S G G ++A+ A++
Sbjct: 71 RYTSTPLDIAACPPLSVLSICRRPRLRIFAIRNAMQRMGIAMVSCGQRGEMVAAIVAVS 129
>01_01_0909 -
7163886-7163931,7164148-7164254,7164370-7164435,
7164720-7164784,7164937-7165000,7165685-7165794,
7165972-7166059,7166100-7166297
Length = 247
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 357 LISKLCYAECSSVDHGMISSLSNSTTKILLEPVPVSSVERLPLRSSVNK 503
LI + Y ECSS I ++ ++ K++L+P V R L+SS N+
Sbjct: 182 LIGAVAYIECSSKTQRNIKAVFDTAIKVVLQPPRHKDVTRKKLQSSSNR 230
>01_06_0268 -
28026512-28026682,28026782-28026919,28027151-28027366,
28027488-28027564,28027845-28028448
Length = 401
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 162 IAATVCAELQIASLRLGVVRIVDTDKGGTEATRGVMHHLVEIKWYRNLKSAVGCTMQENI 341
+ VC L ASL ++ D+G R ++ + + +N+K+AVGC +
Sbjct: 147 VVDVVCFTLTAASLMGDARTVLKGDEGAEFRPRRFVNRTISLDDVKNIKNAVGCVRESEG 206
Query: 342 NKSV 353
K++
Sbjct: 207 KKNI 210
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 262 PLVASVPPLSVSTILTTPKRRLAICSSAQTVAAITTHSTGWG-GN 131
P AS PPL +S + T P +L + +A A GWG GN
Sbjct: 112 PAAASAPPLPLSLLFTAPVAKLLVV-AASPAAVAAGSDEGWGEGN 155
>06_03_0778 - 24523780-24526353
Length = 857
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 242 RYRGDERSHAPPCRNKVVQEFEERRWMHDARKYQ-QVGCFDF*VVLRGMFQCRPWYDIQP 418
R GDE+ H + + + W+H R+ +V + F VVL M CR D
Sbjct: 677 RLLGDEQLHTTVTNVRGTRGYIAPEWLHGDRRIDTKVDVYSFGVVLLEMICCRRCQDPIT 736
Query: 419 VQFYDEDS 442
Q + +D+
Sbjct: 737 SQLHQDDN 744
>03_06_0745 + 35937173-35938256,35938994-35939721
Length = 603
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 227 NNPYYTQAEARNLQFCTDRCRNNNAFNWVGWQPDR 123
NN +YT + A ++Q C N N+ W W P +
Sbjct: 466 NNGHYTASSAYHVQCCGTPSTNFNSLIWKAWAPGK 500
>09_02_0147 -
4968360-4969151,4969959-4970369,4970856-4970921,
4972164-4972233,4972311-4972369
Length = 465
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -3
Query: 635 NMIAG-FVGNALADRYVTSTQFLARGHLAAKTDFIY 531
N+ AG FV ALA R++ T+ +A+G+L AK D +
Sbjct: 120 NIGAGNFVAAALAARFLRMTEAVAKGNLVAKLDSFF 155
>11_02_0006 + 7274148-7274986,7275636-7277586
Length = 929
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 330 QENINKSVVLISKLCYAECSSVDHGMISSLSNSTTKILLEPVPVSSVERLPLRSSVN 500
Q VV I LC +C + GM+S N K +++ V ++ LP VN
Sbjct: 869 QATYGSLVVGIQHLCSLKCIDLTIGMLSEDENDPPKEIIKSVIGDKIKMLPHNPKVN 925
>08_02_1438 + 27108359-27108889
Length = 176
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 159 VIAATVCAELQIASLRLGVVRIVDTDKGGTEATRGVMHHLVEIK 290
V+ TV E ++A + G VR+VD G + G + H+V+++
Sbjct: 97 VLLLTVTTEKEVAVVDGGEVRVVDGGGGYYDPDSGTVEHVVDVE 140
>08_02_1433 - 27063626-27064135
Length = 169
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/93 (24%), Positives = 47/93 (50%)
Frame = +3
Query: 93 GTAEAIAEVDAIRLPPHPVECVVIAATVCAELQIASLRLGVVRIVDTDKGGTEATRGVMH 272
G EA+ V+ + V + + AT E ++A + G VR+VD G + G +
Sbjct: 79 GVREAVRCVEYVDDDDGAVLLLTVTATEGKEKEVAVVDGGEVRVVD-GGGFYDPDSGTVE 137
Query: 273 HLVEIKWYRNLKSAVGCTMQENINKSVVLISKL 371
H+V+++ R + +++E +N+ +V + +L
Sbjct: 138 HVVDVEGAREAYVLL-VSVREELNR-IVRVKRL 168
>01_06_0808 + 32134765-32136570
Length = 601
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Frame = +3
Query: 240 GGTEATRGVMHHLVEIKWYRNLKSAVGCTMQENINKSV--VLISKLCYAECSSVDHGMIS 413
G A + + + + ++ + A T Q +++++ + I KL E S + +S
Sbjct: 165 GALSAVKSIANFMFLSEYDKECSQAYISTRQSAVDENLGSLRIDKLSMEELLSTNWTKLS 224
Query: 414 SLS---NSTTKILLEPVPVSSVERLPLRSSVNKVEASTLTGCIYKVSLSSKM 560
SL N K+ ++ V ++S +RL ++ ST C Y++SLSS M
Sbjct: 225 SLIKRWNRAMKVFVQ-VYLTSEKRLS-NHVFGELSESTADLCFYEISLSSVM 274
>11_01_0631 -
5063622-5063635,5065050-5065203,5065280-5065441,
5065657-5066633,5067502-5067523
Length = 442
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 274 WCMTPLVASVPPLSVSTI 221
WCMTPL+ S+P L +TI
Sbjct: 261 WCMTPLLESMPSLVEATI 278
>12_02_0502 - 19746100-19746185,19746745-19750474
Length = 1271
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +3
Query: 300 NLKSAVGCTMQENINKSVVL----ISKLCYAECSSVDHGMISSLSNSTTKILLEPVPVSS 467
N V C M N+ L ++ L C ++ ++ SL N T L V SS
Sbjct: 987 NFLEIVACPMLRNVKTDSNLFPTSLNNLDINPCCHIEASVLMSLPNLTYLRRLSLVSCSS 1046
Query: 468 VERLP 482
VE+LP
Sbjct: 1047 VEKLP 1051
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = -1
Query: 253 ASVPPLSVSTILTTPKRRLAICSSAQ------TVAAITTH-STGWGGNLIASTSAIASAV 95
A PP++ L TP + + TV+ TTH S G+GG ++S A+A
Sbjct: 448 AHAPPVATPPTLATPVPTPPVTAPPADVPPGFTVSPTTTHYSFGYGGASLSSAMPRAAAA 507
Query: 94 PLLI 83
PL++
Sbjct: 508 PLVL 511
>04_04_1388 - 33179270-33180679
Length = 469
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 135 PPHPVECVVIAATVCAELQIASLRLGVVRIVDTDKG--GTEATRGVMHHLVE 284
P HPV VV + C +Q + +GV R+V T G GT + LV+
Sbjct: 111 PAHPVVAVV-SDFFCGWMQPLAAEIGVPRVVFTPSGVLGTAVPHSLFRRLVK 161
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2
Query: 278 CRNKVVQEFEERRWMHDARKYQQVGCFDF*VVLRGMFQCRPWYDIQPVQFYDEDSARAGS 457
CR+ V+ EERRW+ + ++ G V R PW V+ D + RA
Sbjct: 101 CRDGTVETEEERRWLREEQEALHAGSLK--VPRR-----PPWTPQMTVEELDANEKRAFL 153
Query: 458 SFQR*KAAIEE 490
++R A +EE
Sbjct: 154 EWRRNLARLEE 164
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 235 SVSTILTTPKRRLAI-CSSAQTVAAITTHSTGWGGNLIASTSAIASAVPLLISEELFRTF 59
S+S++L P+ LA+ CSS ++ A H+T W G L A AV E L R F
Sbjct: 139 SLSSLL--PRDDLALMCSSNPSLMA---HATTWWGRLAELALDSADAVAAAAFEALARLF 193
Query: 58 Q 56
Q
Sbjct: 194 Q 194
>09_02_0469 -
9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 30 CQKSVNIESWKVRNSSSEISNGTAEAIAEVDAIRLPP 140
CQ+S E +VR+ +SEIS T E AE++ +R P
Sbjct: 809 CQRSEKAE--QVRSRNSEISEITYEEPAEIELLRNNP 843
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,899,294
Number of Sequences: 37544
Number of extensions: 443841
Number of successful extensions: 1253
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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