Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e24r
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 30 1.3
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 29 3.1
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 29 3.1
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 28 7.1
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 28 7.1
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 28 7.1
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 28 7.1
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p... 28 7.1
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p... 28 7.1
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 28 7.1
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 28 7.1
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 28 7.1
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 28 7.1
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr... 27 9.4
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 239 RRYRGDERSHAPPCRNKVVQEFEERRWMHDARKYQQV 349
R YR +RS +PP RN +E R M R++Q+V
Sbjct: 174 RNYRQRQRSGSPPVRNWRDEEENRRAEMWSKRRFQRV 210
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 107 YSRGRCDQVATPPS*MRC-YCGNGLC---RTADCEPPLGC 214
+ RG CD+ +P M C + G+ + RTA+CE P C
Sbjct: 358 WKRGNCDEAGSPCEKMECGFWGSCVVKPDRTAECECPNRC 397
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 107 YSRGRCDQVATPPS*MRC-YCGNGLC---RTADCEPPLGC 214
+ RG CD+ +P M C + G+ + RTA+CE P C
Sbjct: 366 WKRGNCDEAGSPCEKMECGFWGSCVVKPDRTAECECPNRC 405
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 608 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 643
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 608 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 643
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577
>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
protein R06F6.8a protein.
Length = 1468
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 157 THSTGWGGNLIASTSAIASAVPLLISE 77
TH W G +IAS S AS++P + +
Sbjct: 167 THHVTWTGEIIASLSFRASSIPFSVDQ 193
>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
protein R06F6.8b protein.
Length = 1470
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 157 THSTGWGGNLIASTSAIASAVPLLISE 77
TH W G +IAS S AS++P + +
Sbjct: 167 THHVTWTGEIIASLSFRASSIPFSVDQ 193
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -3
Query: 479 QPFNAGNWN-RLEQNLRRRIGQAGYHTMVYTGTFRVTQLRNQNNRLVDIFL--HRASNGA 309
Q N G++N R+EQ+LR G Y V Q ++RLV + L A + A
Sbjct: 909 QQLNQGDYNIRVEQHLREESGHYDGFCKKYLYLISVDQADMGHSRLVALVLVVAHAMSAA 968
Query: 308 LQIPVPLYFYKV 273
L Y YK+
Sbjct: 969 LWTSCHYYSYKM 980
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 101 RSYSRGRCDQVATPPS*MRCYCGNGLCRTADCEPPLGC 214
R ++ G Q+A S C G+ LCRT +C PP+ C
Sbjct: 542 RLFTDGETWQLAPCVS-CTCRVGHVLCRTTEC-PPIAC 577
>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
protein D1044.6 protein.
Length = 1009
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 295 YHFISTRWCMTPLVASV 245
YH I WC TP++AS+
Sbjct: 883 YHEIFNEWCFTPMLASL 899
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,409
Number of Sequences: 27780
Number of extensions: 358680
Number of successful extensions: 1161
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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