Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e24f
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0168 - 5253588-5254688 30 1.1
04_01_0250 + 3291368-3291454,3291621-3291938 30 1.4
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 30 1.4
01_01_0529 + 3874865-3876285,3876352-3876367 30 1.4
01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920 29 3.3
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 5.8
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 28 5.8
07_01_0327 + 2289472-2289978,2290016-2290444,2290688-2290750,229... 28 5.8
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 5.8
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 27 7.7
>09_02_0168 - 5253588-5254688
Length = 366
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 497 RRACELPESTVTTQPIGCDEIIVLTADRPDSK 402
R+A E+ VTT+ IG E++ A+RP +K
Sbjct: 203 RKALEVATGEVTTEEIGSQEVVQEVAERPAAK 234
>04_01_0250 + 3291368-3291454,3291621-3291938
Length = 134
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 210 DFRSGCTFRVNGDLGQPQPVYIHRGNYLSPTGNTGQIRLNRGE 338
DFR+ T R+N + +P +HRGN + + R + GE
Sbjct: 22 DFRTDTTERINKFEEEEEPQTVHRGNVIEEQEQLNEQRRHGGE 64
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = -3
Query: 401 VRSNIGVTDRTAGSCASDKNLFPTIKTNLXXXXXXXXXXXSVDIYRLRLTKITVDSECAT 222
++ + D T G CASD++ TI N+ + L + C
Sbjct: 317 IKGKLNGADITQGECASDESHLSTIHANIEQIWVETTSDLHLSQVDLLAVPCDKEELCDN 376
Query: 221 ASEI-IPGLIGEH 186
AS I +P L+ EH
Sbjct: 377 ASLISLPQLVNEH 389
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 246 DLGQPQPV--YIHRGNYLSPTGNTGQIRLNRGEQVLIACTGSGR--TIRHPN 389
D+ P V ++ GNY+ P T I+++ +++L+ CT + ++ H N
Sbjct: 392 DMENPYTVCFLLNEGNYIVPEATTWMIKVHMKKKILLGCTSYSKNGSLSHQN 443
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 363 SGRTIRHPNVASNLAVGTVSCQNNNLVTANWLR 461
SGR P + S +A+G +SC ++ V A R
Sbjct: 189 SGRDNPRPRIMSRVAMGVLSCSKDSFVVAEMER 221
>01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920
Length = 274
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 114 VVLALVDPFEVWRAVPPPLQLMLREQASDAFLVYSA 7
+ L+ V P + WRA+P PLQ LR +L+Y A
Sbjct: 22 IFLSHVVPGDWWRALPHPLQSWLR-NGLGGYLIYFA 56
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 273 IHRGNYLSPT---GNTGQIRLNRGEQVLIACTGSGRTI 377
IH +L+PT T + L + V IA TGSG+T+
Sbjct: 619 IHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL 656
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 2 GSAEYTKNASDACSRSI-SCSGGGTALQTSNGSTRARTTG 118
G +++A DAC SC GGG L + TR + G
Sbjct: 527 GGGSDSRSAPDACCNVAGSCVGGGVVLPQPSSKTRLKLHG 566
>07_01_0327 +
2289472-2289978,2290016-2290444,2290688-2290750,
2290845-2291126
Length = 426
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 5 SAEYTKNASDACSRSISCSGGGTALQTS--NGSTRARTTG 118
S Y DAC+ + + SGGG A++ S +G TR G
Sbjct: 206 SPAYDFRLRDACAATCAPSGGGAAVEASSVDGVTRITAVG 245
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 118 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVI 249
LLF +M +S+PIS FN+++ S + +S AH E ++I
Sbjct: 465 LLFSDEMDAGNSSVPISQFNDMRNSEMFSSCLS--FAHFEQSMI 506
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 8 AEYTKNASDACSRSISCSGGGTALQTSNGST 100
AE+ ++AS+ + S+ GGG Q+S G+T
Sbjct: 431 AEHGRSASEGAASSVGGGGGGDMDQSSAGNT 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,387
Number of Sequences: 37544
Number of extensions: 311748
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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