Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e24f
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4)                      29   1.9  
SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)                   29   2.6  
SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   3.4  
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)                       28   5.9  
SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)                27   7.9  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         27   7.9  

>SB_49159| Best HMM Match : WD40 (HMM E-Value=1.4)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 491 ACELPESTVTTQPIGCDEIIVLTADRP 411
           +CE P S +T   +GC + +V+  D P
Sbjct: 100 SCEAPVSNITESSVGCHDNLVIIIDSP 126


>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
          Length = 566

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
 Frame = +1

Query: 118 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLYISTEEII*V 297
           LL LTK  L  T  P+SL   L     KP  +++ +      ++ ++  L   T++++ +
Sbjct: 43  LLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 102

Query: 298 --QLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSAVKTIIS-SQPIGCVVT 468
             +L+   + +L +  K LSL +   + S+T  LL       S  K ++S ++ +  +  
Sbjct: 103 TKKLLSLTKKLLSLTKKLLSLTK--KLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTK 160

Query: 469 VLSGNSHALLTLTMTL 516
            L   +  LL+LT  L
Sbjct: 161 KLLSLTKKLLSLTKKL 176



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
 Frame = +1

Query: 118 LLFLTKMSLKTTSMPISLFNNLKCSPIKPGMISEAVAHSESTVILVSLNLYISTEEII*V 297
           LL LTK  L  T  P+SL   L     KP  +++ +      ++ ++  L   T++++ +
Sbjct: 422 LLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSL 481

Query: 298 --QLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSAVKTIIS-SQPIGCVVT 468
             +L+   + +L +  K LSL +   + S+T  LL       S  K ++S ++ +  +  
Sbjct: 482 TKKLLSLTKKLLSLTKKLLSLTK--KLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTK 539

Query: 469 VLSGNSHALLTLTMTL 516
            L   +  LL+LT  L
Sbjct: 540 KLLSLTKKLLSLTKKL 555


>SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1176

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = +1

Query: 244 VILVSLNLYISTEEII*VQLVIQVRFVLIVGNKFLSLAQDPAVRSVTPMLLLTLLSGRSA 423
           +I++  +  IST  II + + I V  ++   +K LS +     + V+P++   +L   ++
Sbjct: 703 IIIIITSFVISTTVIIMIAITITVVLIISYNHKPLSSSSSTFAKRVSPLVFSPVLFPCNS 762

Query: 424 VKTIIS 441
            + ++S
Sbjct: 763 SRLVVS 768


>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
          Length = 609

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 318 IRLNRGEQVLIACTGSGRTIRHPNVASNLAVGTVSCQNNNLVTANWL 458
           IRL++   +L+  TGSG+T+    +A  L V    C    L  A ++
Sbjct: 266 IRLDKSNILLLGPTGSGKTLLAQTIARCLDVPFAICDCTALTQAGYV 312


>SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)
          Length = 611

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/68 (22%), Positives = 35/68 (51%)
 Frame = +1

Query: 349 SLAQDPAVRSVTPMLLLTLLSGRSAVKTIISSQPIGCVVTVLSGNSHALLTLTMTLNKPT 528
           ++ + P + + T +L+ +L+   S V  ++  QP+  V  ++ GN+  ++     LN   
Sbjct: 282 AILKTPLLHTPTNVLVFSLVLADSLVGILL--QPLAVVYLLIEGNTCTVIDALTFLNVTV 339

Query: 529 LDASIITL 552
           +  S+ T+
Sbjct: 340 IGVSLSTM 347


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 70   HCPPNFERIYQSQDNWL-LFLTKMSLKTTSMPISLFNN 180
            +CP NF+  Y+ +  W+   L  ++L  +   ++L NN
Sbjct: 1450 YCPMNFDEFYKQRRRWMPSTLANLALLISEWRVTLGNN 1487


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,002
Number of Sequences: 59808
Number of extensions: 354397
Number of successful extensions: 948
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)