Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e24f
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.30 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 150 YLDAYLALQQSEMLANQTRNDFRSGCTFRVNGDLGQPQPVYIHR--GNYLSPTGNTGQIR 323
           Y   + A ++  +   + ++   + C F +   + Q QPV ++R   + + P   +  ++
Sbjct: 222 YYKIFCAARRIVLEERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQLNSDVQPGHGSPPVK 281

Query: 324 LNRGEQVLIACTGSGRTIR 380
            +R       C  SG T+R
Sbjct: 282 QHRSSSASTTC--SGHTVR 298


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 452 IGCDEIIVLTADRPDSKVRSNIGVTDRTAGSCASD 348
           I C EI V  A  P +     + + ++T G+C ++
Sbjct: 189 ISCPEISVNFAHFPATPTGREVALIEQTIGTCVAN 223


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 196 IKPGMISEAVAHSES 240
           IKPG I E +AH+ S
Sbjct: 388 IKPGSIIENIAHTRS 402


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 210 DFRSGCTFRVNGDLGQPQPVY 272
           DFR+  ++R+  +L  P P Y
Sbjct: 212 DFRNSRSWRITNNLFYPYPPY 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,613
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)