Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e23r
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0306 + 2499350-2499678,2500041-2500137 31 0.90
01_02_0007 + 10132380-10133201 29 2.7
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.6
04_04_1413 - 33386049-33386339 29 3.6
11_06_0156 + 20748472-20748951 29 4.8
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 29 4.8
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 29 4.8
02_04_0166 - 20508656-20509092,20509282-20509372 29 4.8
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 4.8
01_01_0082 + 625198-625719 29 4.8
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061... 28 6.3
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 28 6.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 8.4
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.4
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900... 28 8.4
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 28 8.4
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 28 8.4
>01_01_0306 + 2499350-2499678,2500041-2500137
Length = 141
Score = 31.1 bits (67), Expect = 0.90
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 35 TLAKPAGWPLWQP*ADPNDVIPI 103
TL + WP+WQP D N ++P+
Sbjct: 119 TLGELMDWPIWQPSQDLNSILPV 141
>01_02_0007 + 10132380-10133201
Length = 273
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +2
Query: 59 PLWQP*ADPNDVIPI---S*RLPPLPMVRGPPESPLQVLRPLEPST---QRVEAMITLFP 220
PL QP DPN+ P+ PP P+ + P SP Q L +P+T Q++ A I+ P
Sbjct: 187 PLPQP--DPNNPQPLPQPDPNAPPQPLPQPDPNSPPQPLPQPDPNTPPGQQINAKISSQP 244
Query: 221 N 223
+
Sbjct: 245 D 245
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 466 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 558
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>04_04_1413 - 33386049-33386339
Length = 96
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -1
Query: 189 CVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPAG 46
C DGS GR +G GG G GG G G GC G +G
Sbjct: 50 CADGSGGRRRRTGGGGG----GGGGGGGCGGGGGGGGGGGCGGGGGSG 93
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 282 CWLPKQHRRSFRSRQPRPKY 341
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 135 LTIGSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSW 16
+ +G GG ++ TS A G R HP FA+ F SW
Sbjct: 13 VAVGGGGGQKTP--TSPRGAPGADRRHPRPFAKNLDFASW 50
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 213 NVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQRGHPA-GFAR 37
N + ST C GS ++ + + GGPLT GS R + G A G P G +
Sbjct: 369 NCLQRSTPCFLGSPKTASFAVNCGGPLTSGSDNLRYQSDEVNLGDASYYITGEPTWGVST 428
Query: 36 VTSF 25
V F
Sbjct: 429 VGRF 432
>02_04_0166 - 20508656-20509092,20509282-20509372
Length = 175
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 186 VDGSNGRSTCSGDSGGPLTIGSGGSR-QLIGITSFGSAQGCQRGHPA 49
V GS+ R + G SGG G GG+R Q+ + + G+A RG+ A
Sbjct: 31 VRGSHARRSKRGISGGAGCGGGGGARGQVTAVGASGAAAEDARGYDA 77
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 59 PLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRP 172
P + P A P + + + PP+P + PP P Q P
Sbjct: 322 PYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQYQTP 359
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +2
Query: 38 LAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEPST 187
L P G P DV+P PP P V PP SP V P P+T
Sbjct: 40 LPSPCGTTCTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPPVAYP-PPTT 88
>09_04_0130 -
14905044-14905505,14905865-14905933,14906000-14906104,
14906625-14906690,14907080-14907268,14907353-14907439,
14907597-14908118
Length = 499
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Frame = -1
Query: 192 LCVDGSNGRSTCSGDSGG-------PLTIGSGGS----RQLIGITSFGSAQGCQRG--HP 52
+ + G GRS G GG PLT+GSGGS + L+ + SA G G +
Sbjct: 125 MMLQGLGGRSPAGGGGGGGDGGLLLPLTLGSGGSGGDVQALLKAAAANSAGGGDAGGVYG 184
Query: 51 AGFA 40
GFA
Sbjct: 185 GGFA 188
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 138 PLTIGSGGSRQLIGITSFGSAQGCQRGHPAGFARVTSFNSW 16
PL+ G+ GSR L+ + G A+G + H ++ F+ W
Sbjct: 304 PLSSGASGSRVLLTTRNEGVARGMRAQHLHPVEKLDRFDGW 344
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 615 CGASLLTNTRSVTAAHC 565
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 536 SSPSLLAQLTSSPEAPGSPPP 474
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>06_03_1249 -
28688997-28689248,28689469-28689533,28690016-28690093,
28691480-28691824,28693314-28693510,28695601-28696601
Length = 645
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 20 ELKDVTLAKPAGWPLWQP*ADPNDVIPIS*RLPPLPMVRGPPESP 154
E D L + PL + DP DV+ + PP P GPP+ P
Sbjct: 143 ECVDTWLDAHSTCPLCRSRVDPEDVLLLP--EPPKPSTTGPPDPP 185
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 83 PNDVIPIS*RLPPLPMVRGPPESPLQVLRPLEP 181
P +IP+ P P V PPE +Q++RP+ P
Sbjct: 517 PPVLIPVPGAGPLGPFVPAPPEVVMQMMRPVMP 549
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 98 PIS*RLPPLPMVRGPP---ESPLQVLR-PLEPSTQRVEAMITLFPNVRAQTALVMTWRLT 265
P+ +L P+P+ + P S + VL P +P +++ I A M WRL
Sbjct: 96 PVMPKLNPVPLPKQPQFVHHSDMHVLHTPADPMHYQLDPCI-------ATEGSAMVWRLC 148
Query: 266 WRFCWLLAPEAAS 304
+ CW + EA +
Sbjct: 149 FECCWPWSSEATN 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.135 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,207,423
Number of Sequences: 37544
Number of extensions: 405705
Number of successful extensions: 2082
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -