Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e23r
(708 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 44 1e-06
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 23 3.7
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 23 3.7
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 23 3.7
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 22 5.0
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 6.6
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 6.6
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 6.6
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 8.7
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 8.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 8.7
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 44.0 bits (99), Expect = 1e-06
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = -1
Query: 270 RQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQL--IG 97
++ +L ++T C + +GN I+ + +C + G+ C DSGGP+ + +++L IG
Sbjct: 311 QKTTLNMLTQVECYKYYGN--IMVNAMCAY-AKGKDACQMDSGGPVLWQNPRTKRLVNIG 367
Query: 96 ITSFGSAQGCQRGHPAGFARVTSFNSWI 13
I S+G+ G +P G +V S+ WI
Sbjct: 368 IISWGAECG---KYPNGNTKVGSYIDWI 392
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.6 bits (46), Expect = 3.7
Identities = 5/11 (45%), Positives = 9/11 (81%)
Frame = -2
Query: 659 CWTCDRTDEWQ 627
CW CD+ +E++
Sbjct: 467 CWVCDQCEEYE 477
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 22.6 bits (46), Expect = 3.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 397 LHQQHPAHQPSQWKQQ 350
+H QHP QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.6 bits (46), Expect = 3.7
Identities = 5/11 (45%), Positives = 9/11 (81%)
Frame = -2
Query: 659 CWTCDRTDEWQ 627
CW CD+ +E++
Sbjct: 557 CWVCDQCEEYE 567
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 22.2 bits (45), Expect = 5.0
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = -3
Query: 112 PSTDRYHIVRISSRL 68
P+T+ Y+I+ +++RL
Sbjct: 116 PNTEEYYIIEVNARL 130
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 567 CWRTRRAQARQFTLALGTANI 505
CW TR+ Q +GT+N+
Sbjct: 459 CWDTRKEYIPQNLGVIGTSNL 479
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 290 EPTTNKNAK*ASRS 249
EP TNKN K SRS
Sbjct: 239 EPGTNKNGKFFSRS 252
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +1
Query: 487 PGAS---GEDVSCAKSEGELTSLGSPG 558
PG S GE S A ++G T+ SPG
Sbjct: 893 PGCSSKNGEPTSAAFAQGFATAASSPG 919
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 631 HSSVRSQVQQDGGEHXRWRQNHPQ 702
HSS ++Q QQ + + +Q PQ
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQ 1518
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 456 SYNMDTLHNDVAIINHNHVGFTNN 385
S + +T+HN+ N+N+ + NN
Sbjct: 83 SLSNNTIHNNNYKYNYNNNNYNNN 106
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 456 SYNMDTLHNDVAIINHNHVGFTNN 385
S + +T+HN+ N+N+ + NN
Sbjct: 83 SLSNNTIHNNNYKYNYNNNNYNNN 106
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 8.7
Identities = 12/49 (24%), Positives = 18/49 (36%)
Frame = +2
Query: 98 PIS*RLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTAL 244
P+S +PP P + P++ P P + P V T L
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTIL 807
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.316 0.135 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,702
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 26
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -