Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e21f
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81039-10|CAB02777.2|  181|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    29   2.2  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    29   2.2  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protei...    27   6.7  
U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protei...    27   6.7  
U39644-6|AAO44907.1|  300|Caenorhabditis elegans Collagen protei...    27   6.7  
U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protei...    27   6.7  
U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protei...    27   6.7  
U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protei...    27   6.7  
Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 354 SPVQKLSTKRISLQCTDLGTLSLICPAVKHIC 449
           S  Q  S+   + +CT +G++ L CP V  +C
Sbjct: 415 SNCQTASSCTSNFECTSIGSMQLCCPTVASVC 446


>Z81039-10|CAB02777.2|  181|Caenorhabditis elegans Hypothetical
           protein C25D7.7 protein.
          Length = 181

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 301 QFATVRLVGGGVGSTFVTLQFRNSA-RRGYHFNVQIWGR*ASSVQPSNTYASVCDSVVLQ 477
           +F  V L  GGVG + +T+QF +S     Y   ++ + R    V    +   + D+   +
Sbjct: 3   EFKVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEVDGQPSVLEILDTAGTE 62

Query: 478 YYSLLMDLY 504
            +S + DLY
Sbjct: 63  QFSSMRDLY 71


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 312 GRELGHPYFPGSDGPDASTG 253
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 312 GRELGHPYFPGSDGPDASTG 253
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 312 GRELGHPYFPGSDGPDASTG 253
           G E GHP  PG DGP+ + G
Sbjct: 54  GGEPGHPGAPGQDGPEGAPG 73


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
           P  D  DG + G P  PG+DGPD
Sbjct: 119 PGQDGEDGSD-GQPGAPGNDGPD 140


>U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protein
           166, isoform b protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
           P  D  DG + G P  PG+DGPD
Sbjct: 120 PGSDGEDGAD-GQPGAPGNDGPD 141


>U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protein
           166, isoform a protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
           P  D  DG + G P  PG+DGPD
Sbjct: 182 PGSDGEDGAD-GQPGAPGNDGPD 203


>U39644-6|AAO44907.1|  300|Caenorhabditis elegans Collagen protein
           170 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
           P  D  DG + G P  PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140


>U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protein
           169 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
           P  D  DG + G P  PG+DGPD
Sbjct: 119 PGQDGEDGAD-GQPGAPGNDGPD 140


>U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protein
           168 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
           P  D  DG + G P  PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141


>U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protein
           167 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 333 PAPDKADGRELGHPYFPGSDGPD 265
           P  D  DG + G P  PG+DGPD
Sbjct: 120 PGQDGEDGAD-GQPGAPGNDGPD 141


>Z81143-1|CAB03513.1|  381|Caenorhabditis elegans Hypothetical
           protein ZK265.2 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -3

Query: 300 GHPYFPGSDGPDASTGRRRVPHVDSLRAGC 211
           G P  PG DGP    G    P  D+    C
Sbjct: 256 GQPGHPGPDGPSGDVGEVGAPGADAAYCPC 285


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 393 QCTDLGTLSLICPAVKHIC 449
           QCT +GTL   CP    IC
Sbjct: 263 QCTTMGTLQQCCPTYLFIC 281


>Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical
           protein F49E11.5 protein.
          Length = 212

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 150 CQTVCSASRAGVSHFISRHGDDRGQ 76
           C+T+C  S  G ++ +SRH   R Q
Sbjct: 16  CETLCEFSETGKNYILSRHNYLRSQ 40


>Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical
           protein M18.1 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 300 GHPYFPGSDGPDASTGRRRVPHVDSLRAGCRSTS 199
           GHP  PG+ GP  + G    P  D+    C S S
Sbjct: 248 GHPGQPGNAGPPGTPGAAGQPGGDAAYCPCPSRS 281


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 393 QCTDLGTLSLICPAVKHIC 449
           QCT +G+    CP   HIC
Sbjct: 318 QCTLIGSQQTCCPTASHIC 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,042,420
Number of Sequences: 27780
Number of extensions: 216664
Number of successful extensions: 887
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)