Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e20f
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 29 1.8
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 29 2.3
02_05_0500 - 29538409-29539283,29540306-29541641 29 2.3
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732 29 2.3
08_02_0453 - 17331534-17331656,17332288-17332340,17332612-173327... 28 4.1
11_01_0460 + 3561490-3564104,3564162-3564558 28 5.4
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 27 9.5
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 9.5
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 518 DVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQFTVENL 399
D P+ + D+ S N GHGDSS ++ F+V ++
Sbjct: 450 DSPETEAAGDDAKESEGKNNPHGHGDSSEAISVMFSVPSM 489
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 246 KVRGSVEGVNAAGFSTFELDSISYNLFTGQLHLSL 350
K+ G++E ++ + F+T L +S+N TGQ+ S+
Sbjct: 348 KLSGNLEAIDFSKFATLTLLDLSFNSITGQVPQSI 382
>02_05_0500 - 29538409-29539283,29540306-29541641
Length = 736
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 231 GENILKVRGSVEGVNAAGFSTFELDSISYNLFTGQLHLSLSLNSVAASIDAA 386
GE + S +G GF+ ELDS+ H+ L +N V ++ A+
Sbjct: 155 GEYLGLTNASTDGNATNGFAAVELDSVKQPYDIDDNHVGLDINGVRSNASAS 206
>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
Length = 1050
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 243 LKVRGSVEGVNAAGFSTFELDSISYNLFTGQLHLS-LSLNSVAASI 377
+++RGS+E +N + +T ++S+N TG + S +SL + A I
Sbjct: 86 VRLRGSLEALNFSALTTLTSINLSHNRLTGMIPQSIMSLKELRALI 131
>08_02_0453 -
17331534-17331656,17332288-17332340,17332612-17332704,
17332747-17332903,17333246-17333384,17333467-17333529,
17337990-17338071,17338167-17338245,17338853-17339032,
17340010-17340272,17340486-17340622,17341662-17341729
Length = 478
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 189 IVNNEYAGGWHLPGGENILKVRGSVEG 269
++NN+YAG H ++ V+GS+EG
Sbjct: 390 VINNKYAGLHHKYAYAQVIDVQGSLEG 416
>11_01_0460 + 3561490-3564104,3564162-3564558
Length = 1003
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 252 RGSVEGVNAA-GFSTF-ELDSISYNLFTGQLHLSLSLNSVAASIDAAEGEVQ 401
RG V ++ A G TF + S+S N FTG++HLSL ++D + +Q
Sbjct: 63 RGLVGQISPALGNMTFLKFLSLSTNSFTGEIHLSLGHLHRLETLDLSNNTLQ 114
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 229 PGRCQPPAYSLFTIGSNGDKRNWALEIQFSIMPSTMRWDSARSTSPYGTAA 77
PG +P +S ++ +GD+R AL++ SI + + +GT A
Sbjct: 56 PGGPRPLPFSSSSMAWHGDRRGEALQVSSSINSIATAYSYRSMSDTHGTGA 106
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -3
Query: 280 AALTPSTEPRTFRMFSPPGRCQPPAYSLFTIGSNGD--KRNWALEIQFSIMPSTMRWDSA 107
+ LT + F ++P CQP L+ G +G+ K + + ++ T + S
Sbjct: 481 SVLTSRFTVKLFPSYAPMDDCQPSLPKLYMAGGSGNKLKDKGSFPVDVGLLGKTPQLTSI 540
Query: 106 -RSTSPYGTAATQATARAKMKA 44
+S +GTAA K +A
Sbjct: 541 HQSRRLFGTAAFTLLKMLKKRA 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,509,705
Number of Sequences: 37544
Number of extensions: 250641
Number of successful extensions: 917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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