Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e20f
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         29   3.2  
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             28   4.2  
SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)                    27   7.3  

>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 285 FSTFELDSISYNLFTGQ--LHLSLSLNSVAASIDAAEGEVQIFDRKLTAD 428
           FS  +L   SY+L TG+  LHLS   + V  S   + G +QI   KL  D
Sbjct: 304 FSKHDLLETSYHLRTGRIDLHLSDDSSEVTPSDPLSGGAMQIRINKLATD 353


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 521 FDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVCGQFTVEN 402
           F+  +  S N++SDNSTS N+   + +S  S     T +N
Sbjct: 379 FNSDNSTSDNSNSDNSTSDNSSSDNSNSDNSYTDNSTSDN 418


>SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)
          Length = 1108

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 ISYNLFTGQLHLSLSLNSVAASIDAAEG 392
           + Y  F+G LH +L +    AS+DA +G
Sbjct: 721 VQYMQFSGSLHANLYMEVEVASVDAFQG 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,121
Number of Sequences: 59808
Number of extensions: 255326
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)