Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e18r
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    41   2e-04
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.49 
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    28   1.1  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   3.5  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   4.6  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   4.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   6.0  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = -3

Query: 652 SGDVGRVDSNNLLYITGRIKELLITAGGENVAPVLIEQAI 533
           +GD G++D +  ++ITGRIKE L+  GGE ++P  I+  +
Sbjct: 386 TGDEGKLDKDGYVFITGRIKE-LVNRGGEKISPAEIDAVL 424


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = -3

Query: 463 LTLKTKVSPETGEPL--DELESEARKWVASLGSS--ATKLSEIVNSKDPAV---HKAIEA 305
           L+L T  +P +   +  D LES  +K  +S  ++  A+  SEI+++KDP V   H A  A
Sbjct: 176 LSLHTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNA 235

Query: 304 GITRAN 287
             + +N
Sbjct: 236 ANSGSN 241


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 466 LLTLKTKVSPETGEPLDELESEARKWVAS-LGSSATKLSEIVNSKDPAVHK 317
           +L+ K+K  PE    L    S A  W++   G    +LS +    +P  H+
Sbjct: 109 ILSAKSKAKPELLRTLTSKSSSAVDWLSERFGLQMDQLSRLAGHSEPRTHR 159


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 290 CACDTRLYSFVDRWVFTVNDFTEFSCGTAQTSNPLPRFTF 409
           C+  T  +S+   W F+ N F E+S  +A  ++ +  +++
Sbjct: 123 CSASTNSHSYDCLWNFSCNSFPEYSSYSASETSSVASYSY 162


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 333 SLLLTISLSLVAELPKLATHFLASLSNSSKGSPVSGLTLVFRVNKTERNFRRSPMS 500
           SLL T+          L   F + +SNSS   P++  T       +  NF+ +P S
Sbjct: 383 SLLGTVEAPAEVGAISLTESFNSPVSNSSPNVPINNFTSTCAFENSHLNFQITPKS 438


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 632 DSANIPGEYQPSSSIA 679
           D  NIPGEY+ SS +A
Sbjct: 595 DEINIPGEYENSSEVA 610


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 705 LNDAEKTKGAIDDDGWYSPGMLAE 634
           LN  E  K A  +DGW+  G + E
Sbjct: 505 LNRPEDNKAAFTEDGWFKTGDVGE 528


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 571 GENVAPVLIEQAIQAELLHVGYAVLIGDRRKFLSVLLTLKTKVSPETGEP 422
           G N AP     A+Q  +L+  + VL  + +K + VLL+L + +  +   P
Sbjct: 585 GNNTAPSSNSVALQLSILNGFWEVLTEELQKDVHVLLSLVSTLENQVNFP 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,405
Number of Sequences: 5004
Number of extensions: 47927
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)