Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e18r
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31669| Best HMM Match : RepL (HMM E-Value=5.7) 173 1e-43
SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3) 35 0.056
SB_37505| Best HMM Match : DM4_12 (HMM E-Value=5.3) 35 0.056
SB_54379| Best HMM Match : AMP-binding (HMM E-Value=0.0023) 34 0.13
SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09) 32 0.39
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13) 31 0.91
SB_49687| Best HMM Match : AMP-binding (HMM E-Value=7.6e-08) 31 1.2
SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09) 30 2.1
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59) 29 2.8
SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8) 29 2.8
SB_40469| Best HMM Match : Crystallin (HMM E-Value=8.3) 29 3.7
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_55728| Best HMM Match : Thg1 (HMM E-Value=3.4) 29 4.9
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041) 28 6.4
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45) 28 8.5
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_54627| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_49960| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4) 28 8.5
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06) 28 8.5
SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_31669| Best HMM Match : RepL (HMM E-Value=5.7)
Length = 237
Score = 173 bits (421), Expect = 1e-43
Identities = 85/155 (54%), Positives = 114/155 (73%)
Frame = -3
Query: 598 IKELLITAGGENVAPVLIEQAIQAELLHVGYAVLIGDRRKFLSVLLTLKTKVSPETGEPL 419
+ EL+ITAGGEN+APV IE I+ E+ + A+LIGD+RKFLS LLTLK +V +TG P
Sbjct: 83 VAELIITAGGENIAPVPIEDNIKKEVPLISNAILIGDKRKFLSCLLTLKVEVEADTGAPT 142
Query: 418 DELESEARKWVASLGSSATKLSEIVNSKDPAVHKAIEAGITRANKHAISNAQKVQKFAIL 239
D L A + S+GS AT +SEI+ +KD V KAI+AG+ RAN+ AIS AQKVQK+ IL
Sbjct: 143 DRLTKAAIAFCKSVGSEATTVSEILKTKDENVMKAIQAGVDRANEEAISRAQKVQKWCIL 202
Query: 238 PSDFSVYTGELGPTLKIKRNVVYEKYKDIIEDFYK 134
+DF+++ GELGPT+K++R +V + YKD I+ YK
Sbjct: 203 ENDFTIHGGELGPTMKLRRPIVSKMYKDTIDALYK 237
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 705 LNDAEKTKGAIDDDGWYSPG 646
LN+ EKTK A+D DGW G
Sbjct: 34 LNNEEKTKEALDVDGWLHSG 53
>SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3)
Length = 160
Score = 35.1 bits (77), Expect = 0.056
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 325 VHKAIEAGITRANKHA-ISNAQKVQKFAILPSDFSVYTGELGPTLKIKRNVVYEKYKDII 149
V +A+ + R K A + + ++V+ + P FSV + T KIKR + + + D+I
Sbjct: 51 VRQAVFEDVVRVCKEAELFSFEQVKAVHLHPEAFSVENDLMTATFKIKRPQIIKAFHDVI 110
Query: 148 EDFYKE 131
E Y E
Sbjct: 111 ESLYHE 116
>SB_37505| Best HMM Match : DM4_12 (HMM E-Value=5.3)
Length = 134
Score = 35.1 bits (77), Expect = 0.056
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 325 VHKAIEAGITRANKHA-ISNAQKVQKFAILPSDFSVYTGELGPTLKIKRNVVYEKYKDII 149
V +A+ + R K A + + ++V+ + P FSV + T KIKR + + + D+I
Sbjct: 36 VRQAVFEDVVRVCKEAELFSFEQVKAVHLHPEAFSVENDLMTATFKIKRPQIIKAFHDVI 95
Query: 148 EDFYKE 131
E Y E
Sbjct: 96 ESLYHE 101
>SB_54379| Best HMM Match : AMP-binding (HMM E-Value=0.0023)
Length = 277
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -3
Query: 664 WLVLSGDVGRVDSNNLLYITGRIKELLITAGGENVAPVLIEQAIQA 527
WL +GD+G D YI GR+KE LI G V P +E +Q+
Sbjct: 144 WLH-TGDIGYYDDQEHFYIVGRVKE-LIKYKGFQVPPAELEDLLQS 187
>SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)
Length = 490
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 705 LNDAEKTKGAIDDDGWYSPGMLAE 634
L+D EKT+ AID+DGW G + E
Sbjct: 307 LHDPEKTREAIDEDGWLHSGDVGE 330
>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
Length = 874
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 664 WLVLSGDVGRVDSNNLLYITGRIKELL 584
WL +GD+G D + YIT R+KEL+
Sbjct: 261 WLH-TGDIGHCDQGDFFYITDRLKELI 286
>SB_49687| Best HMM Match : AMP-binding (HMM E-Value=7.6e-08)
Length = 224
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 664 WLVLSGDVGRVDSNNLLYITGRIKELL 584
WL +GD+G D+ + YIT R+KEL+
Sbjct: 193 WL-RTGDIGYYDTEDYFYITDRLKELI 218
>SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)
Length = 818
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F S G A + NP+P FT
Sbjct: 641 DKWCWDISKFYHGSEGAAMSINPMPEFT 668
>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = -3
Query: 496 IGDRRKFLSVLLTLKTKVSPETGEPLDELESEARKWVASLGSSATKLSEIVNSKDPAVHK 317
I + R L+ L K K + + + ELE+ ++ ASL S +L E V +++ V K
Sbjct: 244 IKEERDALNAALREKEKQLLQLTKKVRELETSNNEFGASLSSKQEEL-ESVRAQEELVLK 302
Query: 316 AIEAGITRANK 284
+E GI K
Sbjct: 303 EVERGIAEEMK 313
>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
Length = 351
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 425 LARLRTHLSLQSQQDREELSSVSNEHSVAYMQEFS-LNSLLDQHWSHIL 568
L LR HL L S +D E LSS+ + + + + L+SL D W ++L
Sbjct: 203 LCSLRDHLWLCSLRDHEWLSSLCDREWLCSLCDHEWLSSLRDYEWLYLL 251
>SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 705 LNDAEKTKGAIDDDGWYSPGMLAE 634
L+DAE+T+ A D GW+ G + E
Sbjct: 182 LHDAERTEEAFDSSGWFYSGDIGE 205
>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
Length = 234
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F+ S G A T NP+ FT
Sbjct: 4 DKWCWDISKFSHGSEGAAMTINPMAEFT 31
>SB_40469| Best HMM Match : Crystallin (HMM E-Value=8.3)
Length = 339
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
DRW + ++ F+ S G A + NP+ FT
Sbjct: 131 DRWCWDISKFSHGSEGAAMSINPMAEFT 158
>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
DRW + ++ F+ S G A + NP+ FT
Sbjct: 103 DRWCWDISKFSHGSEGAAMSINPMAEFT 130
>SB_55728| Best HMM Match : Thg1 (HMM E-Value=3.4)
Length = 269
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = +2
Query: 269 VRYGMLICACDTRLYSFVDRWVFTVNDFTE---FSCGTAQTSNPLPRFTFQFI*RLARLR 439
+RYG+L+ C RL V R + N+F E + S ++ + +
Sbjct: 149 LRYGILLEKCRPRLDFSVSRGFYLNNNFDEAKKWGFSRGGGSGKCAVLVYRIKQNILNEQ 208
Query: 440 THLSLQSQQDREELSSVSNEHS 505
H+ L+ Q E+ + NE S
Sbjct: 209 NHVDLRGQDKEEKWGRIKNEAS 230
>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
Length = 339
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 702 NDAEKTKGAIDDDGWYSPGM 643
+D EKT AID +GW+ G+
Sbjct: 215 DDYEKTDAAIDSNGWFHSGL 234
>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
Length = 936
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 288 ISMPYLTLKKYKSLRSFPQTSLCIPGNWGQH*KLRGTSSM 169
+SMP+ +L+ + L+ + Q++ I +WG L+G +M
Sbjct: 385 LSMPFRSLRPWVLLKHYHQSTKRISTSWGDDRPLQGDCTM 424
>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F+ S G A + NP+ FT
Sbjct: 4 DKWCWDISKFSHGSEGAAMSINPMAEFT 31
>SB_54627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F+ S G A + NP+ FT
Sbjct: 7 DKWFWDISKFSHGSEGAAMSINPMAEFT 34
>SB_49960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F+ S G A + NP+ FT
Sbjct: 4 DKWCWDISKFSHGSEGAAMSINPMAEFT 31
>SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)
Length = 391
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 242 DRKLLYFLSVRYGMLICACDTRLYSFVDRW-VFT-VNDFTEFSC 367
DR ++ R+ + IC L++ VDRW VFT V+ ++ F+C
Sbjct: 299 DRWSVFTCVDRWSVFICVDRWSLFTCVDRWSVFTCVDRWSVFTC 342
>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
Length = 385
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F+ S G A + NP+ FT
Sbjct: 4 DKWCWDISKFSHGSEGAAMSINPMAEFT 31
>SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F+ S G A + NP+ FT
Sbjct: 4 DKWCWDISKFSHGSEGAAMSINPMAEFT 31
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 323 DRWVFTVNDFTEFSCGTAQTSNPLPRFT 406
D+W + ++ F+ S G A + NP+ FT
Sbjct: 1154 DKWCWDISKFSHGSEGAAMSINPMAEFT 1181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,563,194
Number of Sequences: 59808
Number of extensions: 345272
Number of successful extensions: 932
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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