Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e12f
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    29   0.63 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   1.9  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    27   2.6  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   7.8  

>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 250 SSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLGPGDTDLDV 125
           +SK+G+  +   R   +   + +  FL  S ++GPG T+LD+
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNLDI 361


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 416 VTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN 550
           VT SNV +   YN+    + +  +N++ V  + N   I+  S SN
Sbjct: 157 VTNSNVTIEHFYNVKGNVDSLFFLNNDSVAISGNFTEISPFSSSN 201


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 458 DTLHNDVAIINHNHVGFTNNIQRINLASGSNNFAGTW 568
           DT+     ++N  HV   N++Q +   S +   AG W
Sbjct: 230 DTVKQFEGMMNQTHVKAINHLQEVVRVSEAQTLAGEW 266


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 223 VGGRTTHNPGTVEVSGFLGASKTLGPGDTDL 131
           +G    H  G+V   GF G+     P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,409
Number of Sequences: 5004
Number of extensions: 32331
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)