Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e11r
(337 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 65 1e-11
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 50 3e-07
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 50 3e-07
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar... 50 4e-07
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 45 1e-05
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden... 44 3e-05
At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / AC... 41 2e-04
At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / AC... 41 2e-04
At1g51355.1 68414.m05776 expressed protein 36 0.007
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 31 0.14
At4g03170.1 68417.m00433 hypothetical protein 31 0.19
At3g47700.1 68416.m05196 chromosome structural maintenance prote... 30 0.33
At4g00300.1 68417.m00037 fringe-related protein + weak similarit... 29 0.77
At1g33250.1 68414.m04110 fringe-related protein + weak similarit... 29 0.77
At1g78370.1 68414.m09133 glutathione S-transferase, putative sim... 29 1.0
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot... 29 1.0
At1g20600.1 68414.m02573 DNA-binding protein-related low similar... 29 1.0
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 28 1.3
At2g24010.1 68415.m02868 serine carboxypeptidase S10 family prot... 28 1.3
At5g35604.1 68418.m04242 hypothetical protein 27 2.4
At3g26750.1 68416.m03346 expressed protein 27 2.4
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 27 2.4
At1g53680.1 68414.m06108 glutathione S-transferase, putative sim... 27 2.4
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 27 3.1
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot... 27 3.1
At1g60610.2 68414.m06823 expressed protein 27 3.1
At1g60610.1 68414.m06822 expressed protein 27 3.1
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 27 3.1
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot... 27 4.1
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa... 26 5.4
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 26 5.4
At2g23096.1 68415.m02755 oxidoreductase, 2OG-Fe(II) oxygenase fa... 26 5.4
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot... 26 5.4
At1g16370.1 68414.m01958 transporter-related low similarity to o... 26 5.4
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 26 7.2
At5g48060.1 68418.m05938 C2 domain-containing protein contains I... 26 7.2
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 26 7.2
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 26 7.2
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 25 9.5
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 25 9.5
At3g20660.1 68416.m02615 organic cation transporter family prote... 25 9.5
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 25 9.5
At2g25570.1 68415.m03062 expressed protein 25 9.5
At2g23180.1 68415.m02769 cytochrome P450, putative 25 9.5
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 25 9.5
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 65.3 bits (152), Expect = 1e-11
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = -2
Query: 303 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAW 130
M L E+F++ A+KV PS+++ L LY LYKQA G V+ ++P + E AKW AW
Sbjct: 1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTSRPGMFSMKERAKWDAW 60
Query: 129 NGRKGISQDDAKKQYIENAEKL 64
+G S ++A YI ++L
Sbjct: 61 KAVEGKSSEEAMNDYITKVKQL 82
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = -2
Query: 261 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQ 88
+N +K DD L LY+LY+QAT+G N +PS VE +KWK+W G + +A +
Sbjct: 33 KNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRL 92
Query: 87 YIENAEK 67
+++ E+
Sbjct: 93 FVKILEE 99
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = -2
Query: 261 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQ 88
+N +K DD L LY+LY+QAT+G N +PS VE +KWK+W G + +A +
Sbjct: 33 KNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRL 92
Query: 87 YIENAEK 67
+++ E+
Sbjct: 93 FVKILEE 99
>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
RING finger rngB protein, cytosolic - Dictyostelium
discoideum, PIR:S68824; contains Pfam profiles PF01344:
Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
Length = 648
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = -2
Query: 264 VRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKK 91
V+ +K S+D +L LY+L++QAT+G +I +PS VE +KWK+W G + +A +
Sbjct: 33 VKQLSSKFSNDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMR 92
Query: 90 QYIENAEK 67
+++ E+
Sbjct: 93 LFVKILEE 100
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -2
Query: 246 KPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQYIENA 73
K S++ L LY LYK AT G QPS L AKW+AW + ++A ++YI+
Sbjct: 116 KVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLV 175
Query: 72 EKLH 61
+L+
Sbjct: 176 TQLY 179
>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
identical to acyl-CoA binding protein 2 [Arabidopsis
thaliana] gi|12039034|gb|AAG46057
Length = 354
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 243 PSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQYIENAE 70
PSD + LY LYK AT G QPS L AKW+AW + ++A ++YIE
Sbjct: 128 PSDVQQ-QLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVT 186
Query: 69 KLH 61
+L+
Sbjct: 187 QLY 189
>At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 362
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -2
Query: 234 DENLALYSLYKQATIGDVNIAQPSGLVESA--KWKAWNGRKGISQDDAKKQYIENAEK 67
+ + L+ L+K AT G AQP ++ SA KW AW +SQ++A +QY+ K
Sbjct: 254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSK 311
>At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 364
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -2
Query: 234 DENLALYSLYKQATIGDVNIAQPSGLVESA--KWKAWNGRKGISQDDAKKQYIENAEK 67
+ + L+ L+K AT G AQP ++ SA KW AW +SQ++A +QY+ K
Sbjct: 254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSK 311
>At1g51355.1 68414.m05776 expressed protein
Length = 116
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -3
Query: 311 NTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSP 165
N+ STS+++ SP T PSPV+ + CTP SR+P ++ P+P
Sbjct: 32 NSDVTSTSSTSTSPT--STATPSPVSAESGCCTPEKSRIPEMLTCPPAP 78
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 157 CGERQVEGMERSQRHLPRRCQEAIHRKCGETPLQIR 50
CG + + ++ S+ + +CQ HR+C E+PL+I+
Sbjct: 156 CGACKGKMLDTSKDYACLQCQRKFHRECVESPLEIK 191
>At4g03170.1 68417.m00433 hypothetical protein
Length = 250
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 186 DVNIAQPSGLVESAKWKAWNGRKGISQDDAKKQYIEN 76
DV++ P G V+ ++K WNG K KQ++E+
Sbjct: 178 DVSVYGPDGKVQQMEFKMWNGDKTPVLTSGWKQFVED 214
>At3g47700.1 68416.m05196 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 795
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -2
Query: 306 KMSLDEQ---FKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAK 142
++ LDE+ FK+ D RNW K DE ++ ++Y+ I + + S ++E +K
Sbjct: 456 EIELDERLVKFKEEIDNDRNWTAK-VQDELISSSNVYRPPIISSIFLQHLSSIIERSK 512
>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 785
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +2
Query: 56 LEWSFSAFSMYCFL-ASSWEMPLRPFHAFHL-------ALSTRPLGWAMLTSPMVACLYR 211
+ W ++ ++ A E+P R F+ +HL A +TRP+ W P V
Sbjct: 356 ISWGYTVQITRTYMPARMMEVPTRTFNDWHLRSDFTNLAFNTRPVTWTDCQRPRVFYFSH 415
Query: 212 EYSARFSSSLGLVFQFL 262
+S SS + Q+L
Sbjct: 416 AFSNSSSSDTTTISQYL 432
>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 548
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 93 SWHRLGRCLCDRSMPSTWRSPQDRWAGQC 179
+WH R LC R+ P+T P GQC
Sbjct: 508 NWHLAPRRLCCRATPTTTNEPLRLTVGQC 536
>At1g78370.1 68414.m09133 glutathione S-transferase, putative
similar to 2,4-D inducible glutathione S-transferase
GI:2920666 from [Glycine max]
Length = 217
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 147 AKWKAWNGRKGISQDDAKKQYIENAEKLHSK 55
A++K W G+KG Q+ KK++IE + L S+
Sbjct: 109 AQFKVW-GKKGEEQEAGKKEFIEAVKILESE 138
>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 549
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 181 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 267
N+TYG+ GV +KV+++ G P PNL
Sbjct: 31 NVTYGTASPLGVPQKVILING-QFPGPNL 58
>At1g20600.1 68414.m02573 DNA-binding protein-related low similarity
to RAV2 [Arabidopsis thaliana] GI:3868859
Length = 237
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 186 DVNIAQPSGLVESAKWKAWNGRK 118
DV++ P G V+ K+K WNG K
Sbjct: 167 DVSVYGPDGEVQQMKFKMWNGDK 189
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 41 IIYAYLEWSFSAFSMYCFLASSWEMPLRPFHAFHLALSTRPLGWAMLTSP 190
I+ Y E +Y FL W RP H H + T+ + WA SP
Sbjct: 505 ILICYPELILPTTFLYMFLIGLWNFRFRPRHPAH--MDTK-VSWAEAASP 551
>At2g24010.1 68415.m02868 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
Length = 425
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 309 HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQ-ATIGDVNIAQPSGLVESAKWKA 133
H M D+ +K + K SD N ALY Y++ + +I PS + ++ + K
Sbjct: 203 HAMISDKTYKSILKHCSFTADKTSDKCNWALYFAYREFGKVNGYSIYSPSCVHQTNQTKF 262
Query: 132 WNGR 121
+GR
Sbjct: 263 LHGR 266
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 27.5 bits (58), Expect = 2.4
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = -3
Query: 278 RSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKASPKTM 99
RSP R G SP + T C+ RL T+ P + +PS + + K T+
Sbjct: 69 RSPRRPSRGNSSPRRDKARARTDCSPRLSPPSRTMGPPPPVATSPSSQ-WSGEKTDHNTV 127
Query: 98 PRSNTSKMRRNSTPNTHKLLL 36
P+ + R TP K++L
Sbjct: 128 PQKEGGEHR--DTPPRSKVVL 146
>At3g26750.1 68416.m03346 expressed protein
Length = 526
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 75 HFRCIASWHRLGRC-LCDRS-MPS-TWRSPQDRWAGQC 179
HF C + +RL + L D S MPS WR D W G C
Sbjct: 156 HFYCRSCSNRLTKKELLDFSEMPSINWRESADNWFGTC 193
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +1
Query: 19 EIYL--ILSNNLCVFGVEFLRIFDVLLLGIVLGDAFATVPCLPLGALHKTAGLGNVNITY 192
EIY ++ +N C+ V+ +FDVL++ + GD + + +G L T + N+
Sbjct: 236 EIYYEKVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSM-NIG-ED 293
Query: 193 GSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLS 315
G L + V + G+ L P + L +++ RH L+
Sbjct: 294 GIALAEAVHGSAPDIAGMNLANPTAL-LLSGVMMLRHLKLN 333
>At1g53680.1 68414.m06108 glutathione S-transferase, putative
similar to GI:2853219 from [Carica papaya]
Length = 224
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 138 KAWNGRKGISQDDAKKQYIENAEKLHSK 55
K W +KG Q+ KK+++E+ + L ++
Sbjct: 116 KIWGNKKGEEQEKGKKEFLESLKVLEAE 143
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 291 EQFKQVADKVRNWKTKPSDDENLALYSLYKQATI-GDVNIAQPSGLVE 151
E+F+ + + VR W TKP ++A + LYK I I Q G+ E
Sbjct: 729 EEFRLLFEYVREWNTKPKLC-HIAQFVLYKTFNILPPTEIVQVKGIGE 775
>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 181 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 267
N+TYG+ G+ ++V+++ G P PNL
Sbjct: 32 NVTYGTAAPLGIPQQVILING-QFPGPNL 59
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 297 LDEQFKQVADKVRNWKTKPSDDE---NLALYSLYKQATIGDVNIAQPSGLVESAKWKAWN 127
L ++ KQVA + +NW K +E N +L + + G+ N A G+ + + K
Sbjct: 207 LVDKIKQVAVEAQNWHYKAKYNESVVNALKVNLQQVMSHGNDNNAVGGGVADHHQMKEGF 266
Query: 126 GRKGISQDDAKKQYI 82
G I + A Y+
Sbjct: 267 GDSEIDDEAASYNYL 281
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 297 LDEQFKQVADKVRNWKTKPSDDE---NLALYSLYKQATIGDVNIAQPSGLVESAKWKAWN 127
L ++ KQVA + +NW K +E N +L + + G+ N A G+ + + K
Sbjct: 207 LVDKIKQVAVEAQNWHYKAKYNESVVNALKVNLQQVMSHGNDNNAVGGGVADHHQMKEGF 266
Query: 126 GRKGISQDDAKKQYI 82
G I + A Y+
Sbjct: 267 GDSEIDDEAASYNYL 281
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -2
Query: 240 SDDENLALYSLYKQATIGDV--NIAQPSGLV-ESAK-WKAWNGRKGISQDDAKKQYIENA 73
S DE+ + L KQA+IG + + G+ E A+ W + +K + D + +Q +E A
Sbjct: 155 SRDESTTIIRLSKQASIGQLYEMVCAGKGVAKEKARIWDYFEKKKSVLLDPSSEQSVEEA 214
>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 554
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 181 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 267
N+TYG++ GV ++V+++ G P PN+
Sbjct: 33 NVTYGTVSPLGVPQQVILING-QFPGPNV 60
>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Drosophila melanogaster
[GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 288
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -2
Query: 252 KTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 133
K KP + L YS++ TI ++ + + KW A
Sbjct: 238 KVKPRKGDGLLFYSVFPNGTIDQTSLHGSCPVTKGEKWVA 277
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 148 RQVEGMERSQRHLPRRCQEAIHRKC 74
R VE E ++ + RCQ A+H++C
Sbjct: 497 RWVEDWEENKMIICNRCQVAVHQEC 521
>At2g23096.1 68415.m02755 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profile: PF03171
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 274
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -2
Query: 270 DKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 133
+K K KP + + Y+L+ TI ++ +++ KW A
Sbjct: 219 EKCVGLKVKPRQGDAIFFYNLFPNGTIDQTSLHGSCPVIKGEKWVA 264
>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 555
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 181 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 267
N+TYG+ GV ++V+++ G P PN+
Sbjct: 34 NVTYGTASPLGVPQQVILING-QFPGPNI 61
>At1g16370.1 68414.m01958 transporter-related low similarity to
organic cation transporter OCTN1 from [Homo sapiens]
GI:2605501, [Mus musculus] GI:4126605, [Rattus
norvegicus] GI:5679326; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 521
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +3
Query: 3 SII*VGNLFNSK**FMRIWSGVSPHFRCIASWHRLGRCLCDRSMPSTWRSPQDRW 167
S++ + LF+++ F+ +++ P +WH L +CD S + P+ W
Sbjct: 50 SLVGLALLFDAQQIFITVYTDAYP------TWHCLNHTICDPSASDICKLPRSAW 98
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 103 RCQEAIHRKCGETPLQIR 50
+CQ H++C E+PL+I+
Sbjct: 153 QCQGKFHKECVESPLEIK 170
>At5g48060.1 68418.m05938 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1036
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = +2
Query: 41 IIYAYLEWSFSAFSMYCFLASSWEMPLRPFHAFHLALSTRPLGWAMLTSP 190
I+ Y E +Y F W RP H H+ + L WA P
Sbjct: 872 ILVMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMK---LSWAEAVGP 918
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -3
Query: 188 VMLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHKLLLRIK 27
V+ T PS V+ P GT +PK R+ +K + N K LLR++
Sbjct: 160 VVSTFPSKGVVQLVP----GTEVAVAPKRRDRNLKAKKSQEKECNNVKALLRVQ 209
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = -1
Query: 103 RCQEAIHRKCGETPLQIR 50
+C++ H++C E+PL+I+
Sbjct: 149 QCEKKFHKECVESPLEIK 166
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = -1
Query: 103 RCQEAIHRKCGETPLQIR 50
+CQ+ H++C ++PL+I+
Sbjct: 142 QCQKNFHKECVQSPLEIK 159
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 106 RRCQEAIHRKCGETPLQI----RINYYLELNKFP 17
+ C IH+KCGE+ I ++ LELN++P
Sbjct: 380 KSCDIFIHKKCGESSGIIDHSSHPDHTLELNRYP 413
>At3g20660.1 68416.m02615 organic cation transporter family protein
similar to organic cation transporter OCT3 [Rattus
norvegicus] GI:3273722, organic cation transporter 3
[Mus musculus] GI:4454795; contains Pfam profile
PF00083: major facilitator superfamily protein
Length = 534
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 54 IWSGVSPHFRCIASWHRLGRCLCDRSMPSTW 146
I++ P +RC+ S R+G C+ PS+W
Sbjct: 71 IFADQEPEWRCVGSDCRVGSLNCELD-PSSW 100
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 134 HGTVAKASPKTMPRSN-TSKMRRNSTPNTH 48
H T AK SP TM S +S + RN TP++H
Sbjct: 281 HST-AKNSPNTMLGSTMSSPVPRNRTPDSH 309
>At2g25570.1 68415.m03062 expressed protein
Length = 288
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 91 LLGIVL--GDAFATVPCLPLGALHKTAGLGNVN--ITYGSLLVQGVQ 219
LLGIV GD + H+ + G+ I YGSLL++GVQ
Sbjct: 168 LLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAYGSLLLRGVQ 214
>At2g23180.1 68415.m02769 cytochrome P450, putative
Length = 516
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 22 IYLILSNNLCVF--GVEFLRIFDVLLLGIVLGDA 117
I+ I+S+N + G EF +IFDVL GI D+
Sbjct: 89 IHHIMSSNFANYPKGTEFKKIFDVLGDGIFNADS 122
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 172 PAQRSCGE-RQVEGMERSQRHLPRRCQEAIHRKC 74
P SCG RQ + Q + C A+H KC
Sbjct: 273 PGDFSCGVCRQTVDVNYGQYSCDKECHYAVHSKC 306
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,268,723
Number of Sequences: 28952
Number of extensions: 180643
Number of successful extensions: 653
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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