Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e11f
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   2e-06
SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)                 30   0.56 
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      29   1.7  
SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.0  
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)                      27   4.0  
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)                    27   4.0  
SB_35891| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=1.9)              27   4.0  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   5.2  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       27   5.2  
SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98)                    27   6.9  
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)                      27   6.9  
SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_9891| Best HMM Match : KE2 (HMM E-Value=1)                          26   9.2  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +2

Query: 41  LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNG 214
           + + F Q  D VR+ K    D++ L  Y L+KQAT G    ++P    +V  AKW++W+ 
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCKTSRPGFWDIVGKAKWESWHQ 71

Query: 215 RKGISQDDAKKQYIENAEKLHSKY 286
              + Q+ A K Y++    L  ++
Sbjct: 72  HGKMPQEKAMKIYVQELFSLDPEW 95


>SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)
          Length = 300

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 276 WSFSAFSMYCFLASSWEM---PLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 109
           WS   F ++CFL   W M   PL P    HL      + + +  S M+ C+Y E    F
Sbjct: 22  WS-KLFDIFCFLIM-WGMTMSPLTPDQQIHLLKVCYDISYLLGDSTMMMCVYLEAGGTF 78


>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 54  SNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSP-AVLWRAPSGRHGTVAKASP 230
           S+RS     +  P P+  R +  +  T   P +++T  SP A   R+PS       K SP
Sbjct: 289 SSRSDSGDYSAAPPPLPERRMLNSTNTPTSPTLIVTHASPFASPGRSPSNSPRPSPKNSP 348

Query: 231 KTMPRSN 251
           +T PRS+
Sbjct: 349 RTSPRSS 355


>SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -1

Query: 284 IWSGVSPH-FRCIASWHRLGRCLCDRSMPSTWRSPQDRWAGQC 159
           +W G     FR   +  RLGRC     +    R   D W G+C
Sbjct: 446 LWCGYEKSAFRICDTKIRLGRCALSEQLDPARRVYWDTWRGKC 488


>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 165 PSPAVLWRAPSGRHGTVAKASPKTMPR 245
           P P    +AP+ R GT   ASP T P+
Sbjct: 207 PEPVPTPKAPASRPGTKRPASPSTPPK 233


>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
          Length = 153

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 24  DNTKCLSTSNSNRSPIRLGTG-RPSPVTMRTLRCTPCTSR 140
           DN  CL T+ S+ + +  GTG RP+  T+ T    P  +R
Sbjct: 78  DNGLCLPTTASSSAAVPAGTGARPAIFTLATPNRRPTETR 117


>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
          Length = 618

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 165 PSPAVLWRAPSGRHGTVAKASPKTMPR 245
           P P    +AP+ R GT   ASP T P+
Sbjct: 31  PEPVPTPKAPASRPGTKRPASPSTPPK 57


>SB_35891| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=1.9)
          Length = 138

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 315 FI*F*VIIYAYLEWSFSAFSMYCFLASSWEMPLRPFHAFHLALSTRPLGWA-MLTSPMVA 139
           F  F V++Y Y+ W F+ +     L   + +P+ P +     L +  + W+ ++    + 
Sbjct: 34  FFVFRVLVYPYMYWRFAVYKNISLLEVPFNIPI-PCNVACFMLMSLQVNWSFVIIKGCLR 92

Query: 138 CLYR 127
            LYR
Sbjct: 93  YLYR 96


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 59  QVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS-GLVESAKWKAWNGR-KGISQ 232
           Q+ D +   K K S  ++  L S + QAT+GD +  +   G +E      + G   GI+ 
Sbjct: 121 QMKDLLSRGKVKVSLQKHALLDSYFAQATLGDYDTDKHGLGYLEDLLGSTFFGHPSGINS 180

Query: 233 --DDAKKQYIENAEKLH 277
             D ++  Y++    LH
Sbjct: 181 NIDVSETSYVQTVTMLH 197


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 165 PSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRNSTPNTH 290
           P+P+V W  PSG   TV   + +    +N + +  N+T + +
Sbjct: 328 PTPSVSWILPSGAIATVTSPASRVQVLANHTLVIGNATESEY 369


>SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98)
          Length = 809

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 195 SGRHGTVAKASPKTMPRSNTSKMRRNSTPNTHK 293
           SG    V K   +++P+  TSK   + TP+ H+
Sbjct: 564 SGNGKAVEKPREESIPQQTTSKRDESKTPSQHR 596


>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
          Length = 895

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 21  KDNTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSR 140
           KD T  ++ S S R+ + L  GRP  +  +T   T C S+
Sbjct: 64  KDLTNSIA-SGSERNSLHLQPGRPFRINTKTWPSTHCASK 102


>SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 62  VADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKAWN 211
           VA   +  ++K SD+ +L    L  +A++GD ++A P  +  S   K+WN
Sbjct: 302 VAHGQQRRRSKISDELSLVASLLIHEASVGDDDVALPE-VSLSDVMKSWN 350


>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
          Length = 572

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 229 GDAFATVPCLPLGALHKTAGLG 164
           GD  A  P LP  ++H T GLG
Sbjct: 347 GDLAAPTPILPPQSVHNTGGLG 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,901
Number of Sequences: 59808
Number of extensions: 277096
Number of successful extensions: 1007
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)