Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09r
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   188   9e-49
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    30   0.29 
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    29   0.51 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    29   0.68 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   0.68 
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    28   1.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   6.3  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  188 bits (457), Expect = 9e-49
 Identities = 98/188 (52%), Positives = 123/188 (65%), Gaps = 1/188 (0%)
 Frame = -2

Query: 706 VRXIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGDYKTDLVEFLKQE 527
           VR  YAGN  +T+  KDPIK++TVR +AF A P  G  AA            L E++ + 
Sbjct: 154 VRPTYAGNVNVTVSTKDPIKIVTVRASAFDAAPSSGEGAATVVEGIDPKPAALQEWVSEN 213

Query: 526 LTKSDRPELTSAKNIVSGGRGLKSGDNF-KLLYDLADKLNXXXXXXXXXXXXGFVPNDLQ 350
           + K+ RP+L+SA+ +V+GGR LK  + F ++L  LADKL             G+  N LQ
Sbjct: 214 IIKNARPDLSSAERVVAGGRPLKDKETFERILTPLADKLGAAIGATRVAVDSGYADNSLQ 273

Query: 349 IGQTGKIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKA 170
           IGQTGKI+AP LYIAVGI GAIQHLAG+KDSK I AIN+D  APIFQ +D G+V DLF+ 
Sbjct: 274 IGQTGKIIAPKLYIAVGIDGAIQHLAGIKDSKVIAAINRDENAPIFQTADVGIVGDLFEI 333

Query: 169 VPELTSKL 146
           VPELT KL
Sbjct: 334 VPELTEKL 341


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 235  KDPEAPIFQVSDYGLVADLFKAVPELTS 152
            KDPE  + +++ + ++ D FK +PE +S
Sbjct: 1276 KDPEGDLLELACFSMMIDFFKVLPEFSS 1303


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 505 ELTSAKNIVSGGRGLKSGDNFKLLYDLA 422
           +LT    I+S  RG KSGDNF  L++LA
Sbjct: 147 DLTQMAKIISTRRG-KSGDNFVYLFELA 173


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 346 GQTG-KIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEA 221
           G++G + V P  Y+A+   G    +A ++ +K +  +N+D EA
Sbjct: 114 GKSGIRRVVPGEYLAIDAKGRAAMIASVEKNKLVYVLNRDSEA 156


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 96   RKIICIFCKFYVCSLKFVSTFYHCYK 19
            +K+ C FC +Y   + F++T +H Y+
Sbjct: 1162 KKVPCTFCCWYYAGIIFLNTLFHHYE 1187


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 319 DLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLF 176
           D+Y+    +G I+HLA  +  K +VA      +PI     YGL ++LF
Sbjct: 205 DVYLVERATGRIEHLASDQSKKIVVA----EWSPIGHKLVYGLGSNLF 248


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 477 DTIFLALVSSGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNA 626
           DT+ L   ++GLS    S   NST+    SPS     +AD  S+G +  A
Sbjct: 825 DTLSLKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSGISKKA 874


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 504 SGLSDLVNSCFKNSTRSVL*SPSGALSIAADPPSNGSAGNAVPRTVMTLIGSLASRVNI 680
           SGL +L N+C+ NST  +L     A+   +D  S  ++   +     TL+ S+ S   +
Sbjct: 100 SGLINLGNTCYMNSTVQML----RAIPELSDAVSQFNSSGGLVAEYRTLLNSMQSNAPV 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,670
Number of Sequences: 5004
Number of extensions: 53967
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)