Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e09r
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 154 6e-38
01_06_1098 + 34518608-34519546 32 0.40
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 31 0.93
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 29 5.0
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 28 6.6
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 28 6.6
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 28 8.7
04_04_1036 + 30305548-30305588,30305710-30305761,30306408-303064... 28 8.7
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 154 bits (374), Expect = 6e-38
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 7/175 (4%)
Frame = -2
Query: 706 VRXIYAGNAILTLE--AKDPIKVITVRGTAF-PAEPLEGGSAA----IDKAPEGDYKTDL 548
VR IYAGNA+ T+ +DP ++++R T+F P E + A +D + + +
Sbjct: 162 VRPIYAGNALCTVRYTGEDPC-MMSIRSTSFSPTEAMSEAKVAPITQVDLSFLSEGSSGK 220
Query: 547 VEFLKQELTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXGF 368
++ + ++RP+L +A +V+GGRGLKS +NFK+L LA+KL GF
Sbjct: 221 SAWVNLKSQDTERPDLANAPVVVTGGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGF 280
Query: 367 VPNDLQIGQTGKIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVS 203
VPN+LQ+GQTGKIVAP+LY+A G+SGAIQHLAGM+DSK IVA+NKD +APIFQVS
Sbjct: 281 VPNELQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVS 335
>01_06_1098 + 34518608-34519546
Length = 312
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 459 FKPRPPDTIFLALVSSGLSDLV-NSCFKNSTRSVL*SPSGALSIAADPPSNGSAG 620
FKPR PD L+L SGL ++ N+ + V SP ++ AD P NG G
Sbjct: 137 FKPRQPDYTLLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADNP-NGKIG 190
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 31.1 bits (67), Expect = 0.93
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 610 PLEGGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRG 464
P + I PEG YKT+L++ K +T ++ +L SA N +G G
Sbjct: 25 PFCSNANTITHMPEGTYKTNLLQLAKNLITNVNQTQLHSA-NGTAGAAG 72
>03_02_0473 +
8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 589 AIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRG 464
A D+A +D VE L +L ++ +PE T N +S G G
Sbjct: 490 AYDEAANLQSYSDNVESLDSDLNENSQPEATRKANPLSNGHG 531
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 565 DYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYD 428
D+K+ + ++ D PEL SA+ SG + GD+ +Y+
Sbjct: 196 DFKSVVQRLTGKDAVAGDAPELNSAQRFGSGREASRHGDHKVRIYE 241
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 480 TIFLALVSSGLSDLVNSCFKNSTRSV 557
T FLAL S LSD +NS F S R +
Sbjct: 442 TAFLALCHSRLSDYINSIFPMSGRGI 467
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -3
Query: 621 SLQSHWREGLQQLIKHLRATIRLIWL 544
+L SH REG+++L+ +RA IR I L
Sbjct: 104 ALNSHSREGIKELLNAVRAKIREIKL 129
>04_04_1036 +
30305548-30305588,30305710-30305761,30306408-30306487,
30307035-30307110,30307169-30307252,30307356-30307501,
30307608-30307826,30308180-30308271,30308677-30308867,
30309100-30309706,30309811-30310004
Length = 593
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +3
Query: 471 PPDTIFLALVSSGLSDLVNSCFKNSTRSVL*SPSGALSI----AADP--PSNGSAG-NAV 629
PP T F+ SSG S+ S KN+T P GA+ I +DP N G +++
Sbjct: 344 PPQTGFIPPPSSGTSEANTSTSKNTTPEPF-DPFGAIPINSFDGSDPFGAFNSDVGSSSI 402
Query: 630 PRTVMTLIGSLAS 668
P + +G++++
Sbjct: 403 PPPTQSSVGNIST 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,040,244
Number of Sequences: 37544
Number of extensions: 346332
Number of successful extensions: 1035
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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