Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09r
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   6e-61
SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5)                      31   0.72 
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_36921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score =  231 bits (564), Expect = 6e-61
 Identities = 110/167 (65%), Positives = 131/167 (78%)
 Frame = -2

Query: 706 VRXIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGDYKTDLVEFLKQE 527
           VR IYAGNA+ T+++ DPIKV+TVRGTAF A   +GG+   + AP  D   +L  F+KQ+
Sbjct: 20  VRTIYAGNAVTTIKSTDPIKVMTVRGTAFEAASTDGGAVTAEDAPSSDTNNELSSFVKQD 79

Query: 526 LTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXGFVPNDLQI 347
           L  SD PELTSAK +VSGGRG+KSG+NF++LYD+A KLN            G+VPND+Q+
Sbjct: 80  LHVSDLPELTSAKVVVSGGRGMKSGENFQMLYDMAAKLNAAVGASRAAVDAGYVPNDMQV 139

Query: 346 GQTGKIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQV 206
           GQTGK+VAPDLYIAVGISGAIQHLAGMKDSK IVAINKDPEAPIFQV
Sbjct: 140 GQTGKMVAPDLYIAVGISGAIQHLAGMKDSKIIVAINKDPEAPIFQV 186


>SB_36599| Best HMM Match : PSGP (HMM E-Value=5.5)
          Length = 114

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 703 RXIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAP---EGDYKTDLVEFLK 533
           + ++ GN + T+    P+K +T RGT +       G A ID  P   +GD    + E L+
Sbjct: 42  KFVFQGNVVNTIRQAPPVKTLTERGT-YEISTGPSGLAIIDLYPSFLDGDETECMFEQLQ 100

Query: 532 QEL 524
            E+
Sbjct: 101 AEI 103


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
 Frame = +1

Query: 379 RQLHERHPRPHSTYQLDXXXXXXXXXXXXLVHQIQYS*H**VLVC--QIWSIPALKIQPD 552
           R L  R PR +ST Q              L  +  +S     L C   +   P   + P 
Sbjct: 71  RALSPRLPRRYSTPQTMITTAFPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130

Query: 553 QSYSRPQVLYQLLQTLPPMALQGMLCHEQ 639
            +  RP       Q+LPP+   G++C +Q
Sbjct: 131 MNLLRPPFNQPRRQSLPPIGAGGLVCIDQ 159


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 517 IWSIPALKIQPDQSYSRPQV--LYQLLQTLPPMALQGML 627
           +W I  L +QP   Y +PQV  L ++   +PP     +L
Sbjct: 194 VWLIEWLDVQPGSQYRQPQVSFLSRIPMAIPPADANSLL 232


>SB_36921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 682 AILTLEAKDPIKVITVRGTAFPAEPLEGGSAAIDKAPEGDYKTDLVEFLKQELTKS 515
           +IL L A   + ++T+      A    GG     K PEG Y+T  V+ L+ EL K+
Sbjct: 48  SILVLGASSVVLLVTL----LAAFEFFGGCLCAGKNPEGKYRTVEVKRLELELNKT 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,919,300
Number of Sequences: 59808
Number of extensions: 404133
Number of successful extensions: 1205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)