Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09r
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical p...   257   5e-69
Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical pr...   257   5e-69
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    28   7.8  
AC006780-1|AAF60644.2|   89|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  257 bits (630), Expect = 5e-69
 Identities = 127/187 (67%), Positives = 152/187 (81%), Gaps = 1/187 (0%)
 Frame = -2

Query: 703 RXIYAGNAILTLEAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTDLVEFLKQE 527
           R +YAGNA+  +++  PIK++T RGT+F PA+  EGGS A++ AP  D KTDL EFL QE
Sbjct: 147 RTLYAGNAVKKVKSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTDLSEFLGQE 204

Query: 526 LTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXGFVPNDLQI 347
           L+KS+RP+L +AK +VSGGRGLKSGDNFKL+YDLADKL             G+VPND+Q+
Sbjct: 205 LSKSERPDLATAKVVVSGGRGLKSGDNFKLIYDLADKLGAGVGASRAAVDAGYVPNDMQV 264

Query: 346 GQTGKIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAV 167
           GQTGKIVAP+LYIA+GISGAIQHLAGMKDSK IVAINKDP+APIFQV+D GL ADLFKAV
Sbjct: 265 GQTGKIVAPELYIAIGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADIGLKADLFKAV 324

Query: 166 PELTSKL 146
           PELT+ L
Sbjct: 325 PELTAAL 331


>Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  257 bits (630), Expect = 5e-69
 Identities = 127/187 (67%), Positives = 152/187 (81%), Gaps = 1/187 (0%)
 Frame = -2

Query: 703 RXIYAGNAILTLEAKDPIKVITVRGTAF-PAEPLEGGSAAIDKAPEGDYKTDLVEFLKQE 527
           R +YAGNA+  +++  PIK++T RGT+F PA+  EGGS A++ AP  D KTDL EFL QE
Sbjct: 147 RTLYAGNAVKKVKSTAPIKLLTFRGTSFEPAK--EGGSGAVENAPSADIKTDLSEFLGQE 204

Query: 526 LTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXXGFVPNDLQI 347
           L+KS+RP+L +AK +VSGGRGLKSGDNFKL+YDLADKL             G+VPND+Q+
Sbjct: 205 LSKSERPDLATAKVVVSGGRGLKSGDNFKLIYDLADKLGAGVGASRAAVDAGYVPNDMQV 264

Query: 346 GQTGKIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYGLVADLFKAV 167
           GQTGKIVAP+LYIA+GISGAIQHLAGMKDSK IVAINKDP+APIFQV+D GL ADLFKAV
Sbjct: 265 GQTGKIVAPELYIAIGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADIGLKADLFKAV 324

Query: 166 PELTSKL 146
           PELT+ L
Sbjct: 325 PELTAAL 331


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
            F21G4.6 protein.
          Length = 1885

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 456  DFKPRPPDTIFLALVSSGLSD 518
            +FKP  P++I L LVSSGLS+
Sbjct: 1588 EFKPGEPESIALKLVSSGLSN 1608


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 376 HRQLHERHPRPHSTY 420
           H QLH  HP PHS++
Sbjct: 127 HHQLHPSHPPPHSSF 141


>AC006780-1|AAF60644.2|   89|Caenorhabditis elegans Hypothetical
           protein Y47D9A.4 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 601 GGSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELT 497
           GGS  I  + E D   D  + + + L K D+PE T
Sbjct: 51  GGSRGIKSSKEPDSTDDAFKEMAKRLAKKDKPEKT 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,770
Number of Sequences: 27780
Number of extensions: 307571
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)