Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09r
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 224  FRIFVDCYNGFGVFHAGQVLNSTT 295
            ++I+V  YNG G      +LN+ T
Sbjct: 1433 YQIYVTAYNGIGTGDPSDMLNTRT 1456


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 84  CIFCKFYVCSLKFVSTFYHCYKKNR 10
           C+ C+   CS   + T  + Y K+R
Sbjct: 38  CVICERVYCSRNSLMTHIYTYHKSR 62


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 547 VEFLKQELTKSDRPELTSAKNIVSGGRGL 461
           V  L Q+  ++DR EL+  + + +GG  L
Sbjct: 112 VSGLTQQADQTDRDELSHVRALAAGGNHL 140


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 520  KSDRPELTSAKNIVSGGRGLKSG 452
            +SDRPEL+ A+  +   + LK G
Sbjct: 1878 RSDRPELSEAECDIDSLKKLKLG 1900


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 520  KSDRPELTSAKNIVSGGRGLKSG 452
            +SDRPEL+ A+  +   + LK G
Sbjct: 1874 RSDRPELSEAECDIDSLKKLKLG 1896


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 90  IICIFCKFYVCSLKFVSTFY 31
           + CIF   YV  L F+  FY
Sbjct: 221 VTCIFIWAYVIPLIFIILFY 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 90  IICIFCKFYVCSLKFVSTFY 31
           + CIF   YV  L F+  FY
Sbjct: 221 VTCIFIWAYVIPLIFIILFY 240


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +2

Query: 236 VDCYNGFGVFHAGQVLN 286
           ++ YN + ++H G+++N
Sbjct: 139 IEPYNNYYIWHPGKIVN 155


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 577 APEGDYKTDLVEFLKQELTKSD 512
           +PE    T+ VEF+ + L   D
Sbjct: 441 SPEASKATEAVEFIAEHLRNED 462


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +2

Query: 236 VDCYNGFGVFHAGQVLN 286
           ++ YN + ++H G+++N
Sbjct: 139 IEPYNNYYIWHPGKIVN 155


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 574 PEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSG 473
           P GDY  D +E+   +    +  ELT+   I  G
Sbjct: 20  PGGDYSLDEIEWDGGDYEVVESRELTNLVEIFDG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,231
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)