Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09r
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...   185   2e-47
At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2 (ATP-P...    31   0.78 
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put...    29   3.1  
At1g67930.1 68414.m07757 Golgi transport complex protein-related...    28   5.5  
At5g64030.1 68418.m08039 dehydration-responsive protein-related ...    28   7.2  
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At2g35250.1 68415.m04324 hypothetical protein   contains Pfam pr...    27   9.6  
At1g26110.1 68414.m03186 expressed protein                             27   9.6  

>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score =  185 bits (451), Expect = 2e-47
 Identities = 95/196 (48%), Positives = 133/196 (67%), Gaps = 9/196 (4%)
 Frame = -2

Query: 706 VRXIYAGNAILTLE--AKDPIKVITVRGTAFPAEPLEGGS----AAIDKAPEGDYKTDLV 545
           +R IYAGNA+ T+      P  ++T+R T+FP  P+   S    A + +    +++ D V
Sbjct: 165 IRPIYAGNALCTVRYTGAGPC-MLTIRSTSFPVTPITANSESKKATVSQIDLSNFEDDSV 223

Query: 544 E---FLKQELTKSDRPELTSAKNIVSGGRGLKSGDNFKLLYDLADKLNXXXXXXXXXXXX 374
               ++ +    ++RP+L SA+ +++GGR LKS +NFK++  LA+KL             
Sbjct: 224 SKSRYVGRSTQDTERPDLGSARVVITGGRALKSVENFKMIEKLAEKLGGAVGATRAAVDA 283

Query: 373 GFVPNDLQIGQTGKIVAPDLYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVSDYG 194
           G+VPNDLQ+GQTGKIVAP+LY+A G+SGAIQHLAG+KDSK IVA+NKD +APIFQV+DYG
Sbjct: 284 GYVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGIKDSKVIVAVNKDADAPIFQVADYG 343

Query: 193 LVADLFKAVPELTSKL 146
           LV DLF+ +PEL  KL
Sbjct: 344 LVGDLFEVIPELLEKL 359


>At1g09795.1 68414.m01099 ATP phosphoribosyl transferase 2
           (ATP-PRT2) identical to ATP phosphoribosyl transferase
           (AtATP-PRT2) [Arabidopsis thaliana] GI:6683619;
           supporting cDNA gi|6683618|dbj|AB025250.1|
          Length = 413

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 420 SARSYNNLKLSPDFKPRPPDTIFLALVSSGLSDLVNSCFKNSTRSVL*SPSGALSI 587
           S+ S + +  SP F P P  T+ L  +      +V SC  N+ +SVL   + ++S+
Sbjct: 19  SSSSSSLVPSSPLFSPIPSTTVSLTGIRQRCLRMVTSCVSNAQKSVLNGATDSVSV 74


>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 786

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 429 SYNNLKLSPDFKPRPPDTIFLALVSSGLSDLVNSCFKNSTR 551
           S+ NL+ S      PP  I L L +SGL+  + S F+N T+
Sbjct: 293 SWENLRCSYTNSSTPPKIISLNLSASGLTGSLPSVFQNLTQ 333


>At1g67930.1 68414.m07757 Golgi transport complex protein-related
           similar to golgi transport complex protein (GTC90)
           GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
           transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
          Length = 832

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 480 TIFLALVSSGLSDLVNSCFKNSTRSVL 560
           T FL+L    LSDLVNS F  S+R  L
Sbjct: 452 TAFLSLCFGRLSDLVNSIFPMSSRGSL 478


>At5g64030.1 68418.m08039 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 829

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 619 PAEPLEG-GSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLK 458
           P E  +G G A++ K  E   K D  E  K+E TK +    +  K+   GG   K
Sbjct: 84  PNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQK 138


>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam domain
           PF01485: IBR domain
          Length = 655

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 326 CS*LVHRCRHQWCYSALGRHERLQNHCSNQ 237
           C+ +  RC H++CY+  G   ++   C N+
Sbjct: 483 CNHITCRCGHEFCYNCGGGWNKIMGTCLNR 512


>At2g35250.1 68415.m04324 hypothetical protein   contains Pfam
           profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 342

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 206 HLENRSFRIFVDCYNGFGVFHAGQVLNSTTDAYS 307
           ++E R  R++VD YN F   + G    ST +A+S
Sbjct: 300 YIEGRKIRLYVDSYNCFRATYWGYT-KSTGEAFS 332


>At1g26110.1 68414.m03186 expressed protein
          Length = 611

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 453 PDFKPRPPDTIFLALVSSGLSDLVNSCFKNSTRSVL*SPSGALSIAADPP 602
           P+F   PP T   +L  S L +  +S F  ST S + +PS +L     PP
Sbjct: 212 PNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQMLAPS-SLPFPGLPP 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,301
Number of Sequences: 28952
Number of extensions: 283120
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)