Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09f
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    97   2e-21
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   6.0  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   7.9  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
 Frame = +2

Query: 161 STLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKA-NGISKVLVA 337
           S L L EH    LSPA+ + + AAK+ GGDV   V G      ++ +AK+ N + KV+  
Sbjct: 29  SVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQKVAKSVNDLKKVIYV 88

Query: 338 ESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIK 517
           E+  ++    + +  ++    K+ + +H+ +  +  GK V+PR+AA  DV  I+DIIG+ 
Sbjct: 89  ENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVV 148

Query: 518 DANTFVRTIYAGNAILTL 571
            A+TFVR  YAGN  +T+
Sbjct: 149 SADTFVRPTYAGNVNVTV 166


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 299 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 183
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 258 TETSPPIFLAAFNVFWVAGDSTSLLCSASTKV 163
           T T P +FLA   +F   G+    LCS    V
Sbjct: 395 TPTYPELFLAKAKIFLCMGEIEEALCSFKRSV 426


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 231 PRKLEVMSQCLWLEPNVDLLQNPLLRQMVYLK 326
           P+K E   +C  L   +D+LQN + +  + LK
Sbjct: 435 PKKAEATKRCDQLNREIDILQNHVEKLKMSLK 466


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 299 WILQQVHIWFQPQALRHHLQF 237
           W+L  + IWF    +RH   F
Sbjct: 194 WLLSNIAIWFPVHQIRHLFTF 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,147
Number of Sequences: 5004
Number of extensions: 45597
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)