BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12e09f (574 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 115 2e-26 03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 38 0.004 12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 2.6 10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 29 2.6 07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 29 2.6 03_02_0233 - 6622345-6622538,6623526-6624120 29 3.5 01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857 29 3.5 02_05_1275 - 35395228-35395642,35396682-35397250 28 4.6 06_02_0363 - 15172528-15173224,15174564-15174856 28 6.1 05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 28 6.1 03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 28 6.1 03_01_0056 - 471338-471919,472013-472213 28 6.1 01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888... 28 6.1 08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756,883... 27 8.0 07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903 27 8.0 >03_06_0581 + 34886728-34886817,34886990-34887175,34887332-34887543, 34888161-34888318,34888615-34888773,34888921-34888973, 34889265-34889405,34889788-34889823,34890542-34890776, 34891017-34891144 Length = 465 Score = 115 bits (277), Expect = 2e-26 Identities = 67/148 (45%), Positives = 96/148 (64%), Gaps = 6/148 (4%) Frame = +2 Query: 146 LRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGD---VSVLVAGTKCG--PAAESIAKA 310 L R STLV+AEH + P++ + L AA+ IG D VS+L+ G+ G AAE A + Sbjct: 27 LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86 Query: 311 NG-ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDV 487 + +S+VLVA+SDVF AE L+ + Q + ++H++A +T+FGK +LPR AA LDV Sbjct: 87 HPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSFGKNLLPRAAALLDV 146 Query: 488 SPITDIIGIKDANTFVRTIYAGNAILTL 571 SP+TD+ I + FVR IYAGNA+ T+ Sbjct: 147 SPVTDVTSISEPRVFVRPIYAGNALCTV 174 >03_02_0993 - 13058785-13059025,13059188-13059264,13062157-13062351, 13062650-13062811,13062915-13063044,13063082-13063149, 13063244-13063291,13063383-13063448,13063739-13063818, 13064644-13064737 Length = 386 Score = 38.3 bits (85), Expect = 0.004 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = +2 Query: 176 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 298 + +NN +L PA N ++ A+K+ GD+S++V G G A S Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGALAS 209 >12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 Length = 266 Score = 29.1 bits (62), Expect = 2.6 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +2 Query: 197 LSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 298 L P T LNAA + G + G+ C P A S Sbjct: 121 LDPLTHRPLNAAAAVAGHHHLAAGGSSCSPDATS 154 >10_08_0818 + 20801061-20801298,20801409-20801509,20801600-20801817, 20802461-20802824 Length = 306 Score = 29.1 bits (62), Expect = 2.6 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -3 Query: 281 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 192 H+WF P A HH W L++ VP Sbjct: 164 HLWFDPTAGFHHYAILWNPDQILFLVDDVP 193 >07_03_1621 + 28187846-28187915,28189214-28189293,28189485-28189550, 28189801-28189848,28189967-28190034,28190107-28190179, 28190284-28190445,28190620-28190814,28191114-28191190, 28191280-28191481 Length = 346 Score = 29.1 bits (62), Expect = 2.6 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +2 Query: 176 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 298 + +NN +L A + ++ A++ GD++V+V G G A S Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGAMAS 182 >03_02_0233 - 6622345-6622538,6623526-6624120 Length = 262 Score = 28.7 bits (61), Expect = 3.5 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +2 Query: 398 QKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGN 556 +K + F A A A G + LPR A +SP + ++ + A +FV + +G+ Sbjct: 67 EKDWSFLDAAAAAAAAGGS-LPRALAAGALSPASRVLAVTPAPSFVDALLSGH 118 >01_05_0248 + 19889750-19889839,19890294-19890381,19890757-19890857 Length = 92 Score = 28.7 bits (61), Expect = 3.5 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = -1 Query: 550 SINCSHKGISILDTNDISYW*HIKLGRNS 464 ++ C + I++ +D YW HIK+ R++ Sbjct: 23 AVGCRRRSHHIIECDDAEYWHHIKIERST 51 >02_05_1275 - 35395228-35395642,35396682-35397250 Length = 327 Score = 28.3 bits (60), Expect = 4.6 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -3 Query: 281 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 192 H+WF P A HH W L++ VP Sbjct: 168 HLWFDPTADFHHYAILWTSDHIIFLVDDVP 197 >06_02_0363 - 15172528-15173224,15174564-15174856 Length = 329 Score = 27.9 bits (59), Expect = 6.1 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -2 Query: 336 ATKTLDIPFA-LAMDSAAGPHLVPATSTETSP 244 A+ + +PFA LA DS A PH S+ TSP Sbjct: 291 ASLIVRVPFADLATDSGASPHSSSGWSSPTSP 322 >05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 Length = 503 Score = 27.9 bits (59), Expect = 6.1 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 309 ALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTSLLCSASTKVL 160 A + +AA P L A + T+P LAA + +T+ L +A+T V+ Sbjct: 60 AREVPAAAAPRLATAATCFTAPARLLAAATTAALIASTTACLLAATTGVI 109 >03_05_0822 - 27963849-27964544,27965043-27965091,27965372-27965480, 27965979-27966006,27966086-27966276,27966418-27966532, 27966955-27967206 Length = 479 Score = 27.9 bits (59), Expect = 6.1 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = +2 Query: 146 LRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVS-VLVAGTKCGPAAESIAKANGIS 322 L +L+ + H LSP + + G + S VLVA K G E I+ + + Sbjct: 99 LAQLEKIRDESRHQQTELSPDNMTDIPYTEGGGKNGSWVLVACDKPGANMEEISGIDNEN 158 Query: 323 KVLVAESDVFKGFTA 367 VLV + D+ G T+ Sbjct: 159 YVLVNDDDIIDGMTS 173 >03_01_0056 - 471338-471919,472013-472213 Length = 260 Score = 27.9 bits (59), Expect = 6.1 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -3 Query: 281 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 192 H+WF P A HH W L++ VP Sbjct: 118 HLWFDPTADFHHYAILWNPDHIVFLVDDVP 147 >01_06_1790 - 39888313-39888350,39888437-39888530,39888612-39888836, 39888944-39889018,39889144-39889212,39889319-39889384, 39889492-39889713,39889794-39890681,39890973-39891053, 39892546-39892598,39893010-39893088,39893218-39893319 Length = 663 Score = 27.9 bits (59), Expect = 6.1 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 324 LDIPFALAMDSAAGPHLVPATSTETSPP 241 L++ + +MD+AAG HL PA S+ S P Sbjct: 201 LNLNWDQSMDAAAGGHLDPALSSMVSSP 228 >08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756, 8832908-8833011 Length = 577 Score = 27.5 bits (58), Expect = 8.0 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 284 PAAESIAKANGISKVLVAESD 346 PAA S+ KANGIS V + ++D Sbjct: 44 PAAVSLLKANGISAVRIFDAD 64 >07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903 Length = 606 Score = 27.5 bits (58), Expect = 8.0 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +2 Query: 284 PAAESIAKANGISKVLVAESD 346 PAA S+ KANGIS V + ++D Sbjct: 72 PAAVSLLKANGISAVRIFDAD 92 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,372,929 Number of Sequences: 37544 Number of extensions: 286616 Number of successful extensions: 851 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 827 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 848 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1328870592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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