Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09f
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 32   0.38 
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_26806| Best HMM Match : Annexin (HMM E-Value=0)                     30   1.5  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               29   2.7  
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)                   28   4.7  
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)                  28   4.7  
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)            28   4.7  
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)              28   4.7  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)                    27   8.2  

>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = +2

Query: 479 LDVSPITDIIGIKDANTFVRTIYAGNAILTLE 574
           LDV+P++DI+ I   +TFVRTIYAGNA+ T++
Sbjct: 2   LDVAPLSDIMEILSEDTFVRTIYAGNAVTTIK 33


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 89  ILLIKMFAPNSRHLFLSGQLRRLQSTLVLAEHNNEVLSPATQNTLN 226
           ++L+    PNS H FL   L  +++ L+L     + + P TQ  +N
Sbjct: 502 LILVPCNTPNSNHWFLLAVLPHMKAVLLLDSRAVDYVKPPTQKAMN 547


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 90   SCLSKCLHP-IAGIYFCLDSCVVCKVL*CSPSTTMRYYLQQPKIH*MLPRKLEVMSQCLW 266
            +CL  C++P ++ ++ C  +CV   V  CSP     +      ++  + R L  +S C+ 
Sbjct: 1266 TCLFACVYPSVSRVFTCRSACVHLSVRVCSPVCPRVFTCLFACVYPSVSRVLTCLSACVH 1325

Query: 267  LEPNV 281
            L   V
Sbjct: 1326 LSVRV 1330


>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 829

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 134 LSGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSV--LVAGTKCGPAAESIAK 307
           + G LR   + LVL  +  +  S A  + LNAA   G  V+V  +VAGT+ GP A+  A 
Sbjct: 655 MKGDLR--DALLVLISYGQDP-SQAAADKLNAALHDGDTVTVARIVAGTQQGPLADLEAS 711

Query: 308 AN 313
            N
Sbjct: 712 YN 713


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 368 ETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRT 541
           E   PL+   Q    F  +++ A   G+T  P    + D+SP    +     N +V T
Sbjct: 357 ENFVPLLQRRQAPLLFVRVVSQALETGRTTSPSWDYRPDMSPFHGTLTSPSGNVYVAT 414


>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 452 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 565
           T +P+V A+L    +  ++    AN FV  +Y   AI+
Sbjct: 289 TAIPKVVARLGAQKLNGVLHPGTANVFVGVLYGATAIV 326


>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
          Length = 1346

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 452 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 565
           T +P+V ++L    +  ++    AN FV  +Y  +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGALYGASAIV 315


>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
          Length = 490

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 391 GYTKTVQIHSYLSTSNCFRKDGAATSCG 474
           G TKT Q H   ST   F KDGA    G
Sbjct: 194 GDTKTFQSHGCRSTCGMFMKDGARAIAG 221


>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
          Length = 670

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 452 TVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 565
           T +P+V ++L    +  ++    AN FV  +Y  +AI+
Sbjct: 278 TAIPKVVSRLGAQKLNRVVHPGTANVFVGVLYGASAIV 315


>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 440

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -2

Query: 357 PLKTSLSATKTLDIPFALAMDSAAGPHLVPATSTETSPPIFLAAFNVFWVAGDSTS 190
           P  T + AT T+       +  A  P L P    + S P+F AA NV      STS
Sbjct: 175 PPSTLMGATGTVSTVGVPGLGGAQNP-LGPGPQVQASKPLFPAAQNVNGTVASSTS 229


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +2

Query: 287  AAESIAKANGISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFG--KTVL 460
            A+E+ A     +K    E+      TAE +T  +   + Q KFT   AP ++     T  
Sbjct: 978  ASETTAAPETTAKPETTETPAASVVTAEVITESLSTAEPQVKFT-TAAPISSESPETTAA 1036

Query: 461  PRVAAKLDVSPITDIIGIKDANTFVRTI 544
               A+    +PIT+    KDA   V T+
Sbjct: 1037 VTTASPTTDAPITNKPTTKDAIPDVSTV 1064


>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
          Length = 1270

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -2

Query: 348  TSLSATKTLDIPFALAMDSAAGPHLVPATST---ETSPPIFLAAFNVFWVAGDSTSLLCS 178
            TS +A ++   PFAL   S  GP   P TST   E SP       N     G+S  L+  
Sbjct: 1202 TSRTAIESKSQPFALHETSFVGPFNKPMTSTPMLELSPTSGPGGSNSGEEGGESRPLIDG 1261

Query: 177  ASTKVL 160
             + K L
Sbjct: 1262 GAEKKL 1267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,801
Number of Sequences: 59808
Number of extensions: 337686
Number of successful extensions: 1015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)