Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09f
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical p...   150   6e-37
Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical pr...   150   6e-37
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    34   0.062
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    27   9.5  

>Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  150 bits (364), Expect = 6e-37
 Identities = 72/137 (52%), Positives = 97/137 (70%)
 Frame = +2

Query: 152 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVL 331
           RL STLV+AEH+   L+P T N + AA K+G +VSVLV G      AE +AK NG+ +VL
Sbjct: 19  RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78

Query: 332 VAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIG 511
           VA+ +  K    E + P+ILA+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+  
Sbjct: 79  VAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTE 138

Query: 512 IKDANTFVRTIYAGNAI 562
           +  A++F RT+YAGNA+
Sbjct: 139 VHSADSFTRTLYAGNAV 155


>Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  150 bits (364), Expect = 6e-37
 Identities = 72/137 (52%), Positives = 97/137 (70%)
 Frame = +2

Query: 152 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKANGISKVL 331
           RL STLV+AEH+   L+P T N + AA K+G +VSVLV G      AE +AK NG+ +VL
Sbjct: 19  RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78

Query: 332 VAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIG 511
           VA+ +  K    E + P+ILA+QKQF FT I A ++AFG+ V+PRVAAKLDVS I+D+  
Sbjct: 79  VAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTE 138

Query: 512 IKDANTFVRTIYAGNAI 562
           +  A++F RT+YAGNA+
Sbjct: 139 VHSADSFTRTLYAGNAV 155


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 24/93 (25%), Positives = 42/93 (45%)
 Frame = +2

Query: 65  IKTDFLNKILLIKMFAPNSRHLFLSGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIG 244
           +K+     +  I+ F  N     + G   R+  T V    +++    +T+ T N   K+ 
Sbjct: 200 VKSSTSQALAEIRSFIKNYAEDVIDGTTTRVGLTAV-NNFDSDAFKRSTEVTYNKGVKLI 258

Query: 245 GDVSVLVAGTKCGPAAESIAKANGISKVLVAES 343
           GD+  L    K GP   + A AN + KV++ +S
Sbjct: 259 GDLQTLQMSPKTGPDCRNTA-ANLLEKVIIIQS 290


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 413 FTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAIL 565
           ++  ++P T  G TV+  VA   + +P+T  + + D NT      +GN +L
Sbjct: 339 YSTTISPTTPIGSTVITVVANSENNTPLTYSL-LADTNTVSIDEVSGNVVL 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,572
Number of Sequences: 27780
Number of extensions: 259321
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)