Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e09f
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...   118   3e-27
At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein...    29   2.9  
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu...    28   3.8  
At3g14910.1 68416.m01885 expressed protein                             28   3.8  
At3g22490.1 68416.m02843 late embryogenesis abundant protein, pu...    28   5.1  
At5g12960.1 68418.m01486 expressed protein                             27   6.7  
At5g12950.1 68418.m01485 expressed protein putative secreted pro...    27   6.7  
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati...    27   6.7  

>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score =  118 bits (284), Expect = 3e-27
 Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 5/169 (2%)
 Frame = +2

Query: 80  LNKILLIKMFAPNSRHLFLSGQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIG--GDV 253
           L K   +   AP S  + ++  L R  STL+LAEH +  + P T +T+ AA  +G    +
Sbjct: 10  LTKNKFVASNAPRSISISITS-LSRCISTLILAEHESGTIKPQTVSTVVAANSLGESSSI 68

Query: 254 SVLVAGTKCG--PAAESIAKAN-GISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHI 424
           S+L+AG+      AA   A  +  +S+VLVA+SD F+   AE    L+   ++Q  ++HI
Sbjct: 69  SLLLAGSGSSLQEAASQAASCHPSVSEVLVADSDKFEYSLAEPWAKLVDFVRQQGDYSHI 128

Query: 425 LAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTL 571
           LA +++FGK +LPRVAA LDVSPITD++ I  ++ F+R IYAGNA+ T+
Sbjct: 129 LASSSSFGKNILPRVAALLDVSPITDVVKILGSDQFIRPIYAGNALCTV 177


>At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 530

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +2

Query: 275 KCGPAAESIAKANGISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKT 454
           KCG   +   KA+   K  +A   V +  + E +TP I++       T++++P T   KT
Sbjct: 322 KCGKCGQLGHKASRCMKPHLAHEKVTEIVSEEIITPAIVSLASA---TNLVSPITLQTKT 378

Query: 455 VL--PRVAAKLDVSPITDI 505
            +  P   +K+ +  + DI
Sbjct: 379 PIDVPITNSKIQIDTVFDI 397


>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           N-terminal partial sequence of endo-xyloglucan
           transferase GI:2244732 from [Gossypium hirsutum]
          Length = 293

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 290 QQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVP 192
           Q+V++WF P    H    SW H      ++ VP
Sbjct: 139 QRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVP 171


>At3g14910.1 68416.m01885 expressed protein
          Length = 455

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 197 LSPATQNTLNAAK-KIGGDVSVLVAGTKCGPAAESIAKANGISKVLVAESDVFK 355
           LSP    ++ A +  +  DV V+VAGT CG         + I K +V +S + K
Sbjct: 71  LSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQSRILK 124


>At3g22490.1 68416.m02843 late embryogenesis abundant protein,
           putative / LEA protein, putative similar to LEA protein
           in group 5 (AtECP31) [Arabidopsis thaliana] GI:1526422;
           contains Pfam profile PF04927: Seed maturation protein
          Length = 262

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 492 GDTSSLAATRGSTVFPKAVAGAKI 421
           GDT+ LAA RG TV    V GA++
Sbjct: 75  GDTTDLAAERGVTVAQTDVPGARV 98


>At5g12960.1 68418.m01486 expressed protein
          Length = 865

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 326 VLVAESDVFKGFTAETLTPLILATQKQFKFT 418
           VL  ++D   GF A T  P+++ +Q++++ T
Sbjct: 329 VLAIQADDISGFHANTHIPIVVGSQQRYEIT 359


>At5g12950.1 68418.m01485 expressed protein putative secreted
           protein SCF41.30c, Streptomyces coelicolor,
           EMBL:SCF41_30
          Length = 861

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 326 VLVAESDVFKGFTAETLTPLILATQKQFKFT 418
           VL  ++D   GF A T  P+++ +Q++++ T
Sbjct: 325 VLAIQADDISGFHANTHIPIVVGSQQRYEIT 355


>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
           similar to (1-4)-beta-mannan endohydrolase [Coffea
           arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
           GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
           profile PF00150: Cellulase (glycosyl hydrolase family 5)
          Length = 408

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +2

Query: 269 GTKCGPAAESIAKANGISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFG 448
           G +  P+ +     NG+  +L  +     GF A  L         +FK T++   AT+ G
Sbjct: 20  GVEAAPS-DGFVSRNGVQFILNGKPFYANGFNAYWLAYEATDPTTRFKITNVFQNATSLG 78

Query: 449 KTV 457
            T+
Sbjct: 79  LTI 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,834,536
Number of Sequences: 28952
Number of extensions: 237466
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)