Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e08r
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    26   1.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   1.5  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   2.0  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   2.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   3.6  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   3.6  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   3.6  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    24   4.7  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    24   6.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    23   8.3  
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   8.3  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    23   8.3  

>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 313 YFTLLSGCGNQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKV 167
           Y++LLS     E    + +  +  N N +SAW   G  Y+   N  A +
Sbjct: 347 YYSLLS---EHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAI 392


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 163  EAPWLRCLSSLCKLNQLASKRSFC 234
            +AP L  LS++C  +  + KR FC
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFC 990


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 223 RSFCYCSC 246
           RSFCYCSC
Sbjct: 158 RSFCYCSC 165


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 116 RISRQSHTLGQRTTCTPPESCSKVKK 39
           ++ ++S     +T  TPP+ CS +KK
Sbjct: 36  QMKKESLAASVKTPSTPPKECSHLKK 61


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 123 NVTNLTSESHLGPTDDLHTSRKLFQS 46
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 172 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 65
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 26  WLTIPSSLWNSFLEVCR 76
           WL+IP+S W++F +  +
Sbjct: 507 WLSIPASRWSTFYDASK 523


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
 Frame = -3

Query: 304 LLSGCGNQENFNLFL-RIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEA 128
           LL+G   Q+  N +  +I + K  + +  WRQ GLT +   +   +   +       + +
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLTTLEQGHKYERDKTQKFLLSKASAS 320

Query: 127 LKRDESHVRVTPWANGRP---AHLQKAVPK*RRNS*PTM 20
             +   HV+        P     +QK VP  R+ + PTM
Sbjct: 321 YDKQLRHVKSFNQTTSAPFQVRDIQKIVP--RKPATPTM 357


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 123 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 34
           ++TNLT        D L T   LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
          Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 5  LMIFMHGWLTIPSSLWNSFLE 67
          L  F+ GW+ + S+ W S L+
Sbjct: 9  LFQFLFGWIVLSSAQWLSVLD 29


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 110 SRQSHTLGQRTTCT 69
           SRQS TL  RT CT
Sbjct: 132 SRQSGTLNNRTLCT 145


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 127 TPLLEILALVTCEAPWLRCLSSLCKLN 207
           TP   + + VT + PWL  L   CK N
Sbjct: 207 TPGTILPSTVTVKTPWLSVLPFNCKKN 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,321
Number of Sequences: 5004
Number of extensions: 22842
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)