BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12e08r (315 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri... 64 1e-11 At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 27 2.6 At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 27 2.6 At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi... 27 2.6 At3g14710.1 68416.m01860 F-box family protein ; similar to SKP... 27 2.6 At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera... 27 2.6 At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera... 27 2.6 At4g30350.1 68417.m04313 heat shock protein-related contains sim... 27 3.5 At3g15380.1 68416.m01950 choline transporter-related contains we... 26 4.6 At1g52080.1 68414.m05875 actin binding protein family contains P... 26 4.6 At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04... 26 6.1 At2g44440.1 68415.m05526 emsy N terminus domain-containing prote... 26 6.1 At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transfera... 25 8.1 >At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial identical to ATP synthase epsilon chain, mitochondrial SP:Q96253 from [Arabidopsis thaliana] Length = 70 Score = 64.5 bits (150), Expect = 1e-11 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = -3 Query: 241 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 74 +N + WR AG+TYI+YSNI A ++R LK+ +AEAL R++ H ++ WA+G+P Sbjct: 3 SNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58 >At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein kinase, putative Length = 654 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 50 WNSFLEVCRSSVGPRCDSDVRFVTFQRL 133 WNS +C+S VG C SD V RL Sbjct: 67 WNSTNHICKSWVGVTCTSDGTSVHALRL 94 >At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc finger domain-containing protein-related contains Pfam profiles PF03468: XS domain, weak hit to PF03470: XS zinc finger domain Length = 625 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = -2 Query: 233 QNERLEASWFNLHKLLKH-RSQGASQV 156 QN W+NLH LL H R++GA +V Sbjct: 232 QNGPGAIDWYNLHPLLAHARTKGARRV 258 >At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 834 Score = 27.1 bits (57), Expect = 2.6 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 286 NQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 119 N+E NLFL +++++ R T+ N A + L QEF + LKR Sbjct: 536 NEEALNLFLELQLSRE-------RPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584 >At3g14710.1 68416.m01860 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 442 Score = 27.1 bits (57), Expect = 2.6 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 121 VSTPLLEILALVTCEAPWLRCLSSLCKLNQLASK 222 + +PLL I + C + + S +CK+ LASK Sbjct: 219 IDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASK 252 >At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase family protein glycosyltransferase family Length = 479 Score = 27.1 bits (57), Expect = 2.6 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 46 TLEQLSGGVQVVRWP 90 TLE LSGGV +V WP Sbjct: 381 TLESLSGGVPMVCWP 395 >At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase family protein glycosyltransferase family Length = 309 Score = 27.1 bits (57), Expect = 2.6 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 46 TLEQLSGGVQVVRWP 90 TLE LSGGV +V WP Sbjct: 211 TLESLSGGVPMVCWP 225 >At4g30350.1 68417.m04313 heat shock protein-related contains similarity to heat shock protein 101 [Triticum aestivum] gi|6013196|gb|AAF01280 Length = 924 Score = 26.6 bits (56), Expect = 3.5 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -1 Query: 123 NVTNLTSESHLGPTDDLHTSRKLFQSEEGIVNQPCMK 13 ++ T +H G T LH + L S G + Q C+K Sbjct: 23 SIAEATRRNH-GHTTPLHVAATLLSSSSGYLRQACIK 58 >At3g15380.1 68416.m01950 choline transporter-related contains weak similarity to CD92 protein [Homo sapiens] gi|16945323|emb|CAC82175 Length = 700 Score = 26.2 bits (55), Expect = 4.6 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 241 NNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 119 +N+ + W+Q G I I K +RRS+ RA LKR Sbjct: 193 SNSSLRHWQQMGGVNIQEDMIIDKSIRRSMNS--RASVLKR 231 >At1g52080.1 68414.m05875 actin binding protein family contains Prosite PS00019: Actinin-type actin-binding domain signature 1; similar to actin binding protein (GI:28071265) [Arabidopsis thaliana]; similar to A-type inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox virus] Length = 573 Score = 26.2 bits (55), Expect = 4.6 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -2 Query: 266 IFENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQV 156 +F K K+ Q +NE+L+A F K+L SQV Sbjct: 191 VFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQV 227 >At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510 : Family of unknown function (DUF577)); common family comprised of At5g37410, At5g37400, At5g37920, At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 Length = 607 Score = 25.8 bits (54), Expect = 6.1 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = -2 Query: 278 KFQFIFENKSKQEQ*QNERLEASWFNLH 195 + FI E K+E+ Q E W NLH Sbjct: 526 RINFIVERGVKEEEKQLPETEFDWLNLH 553 >At2g44440.1 68415.m05526 emsy N terminus domain-containing protein / ENT domain-containing protein contains Pfam profile PF03735: ENT domain Length = 429 Score = 25.8 bits (54), Expect = 6.1 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Frame = -3 Query: 286 NQENFNLFLRIKVNKNNNKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALK--RDE 113 N+E+ L R+ + ++ WRQ+G + N AA+V+ +L + ++K + Sbjct: 102 NEEHRELLGRVNSDDTIRRIREWRQSGGMQPSMRN-AAQVVHDTLPSPSVSASMKTHKPN 160 Query: 112 SHVRVTPWANGRPAHLQKAVP 50 + P+A+ P+ +A P Sbjct: 161 QPIPSQPFASSSPSFHPQADP 181 >At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase; similar to UDP-glucose glucosyltransferase GI:3928543 from [Arabidopsis thaliana] Length = 487 Score = 25.4 bits (53), Expect = 8.1 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 46 TLEQLSGGVQVVRWP 90 TLE L+GGV ++ WP Sbjct: 387 TLESLAGGVPMICWP 401 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,877,859 Number of Sequences: 28952 Number of extensions: 119627 Number of successful extensions: 376 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 369 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 376 length of database: 12,070,560 effective HSP length: 71 effective length of database: 10,014,968 effective search space used: 330493944 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -