Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e07r
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0367 - 16840732-16843428,16844425-16844760 31 0.85
02_02_0667 + 12765759-12765787,12766644-12766732,12766967-127670... 30 1.5
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 29 2.6
07_01_0355 + 2597592-2598280,2599150-2599426 29 3.4
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 3.4
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 29 4.5
08_01_1032 + 10447474-10448030,10448784-10449813 28 6.0
01_01_0863 - 6724200-6724414,6726300-6726576,6726976-6727145,672... 28 6.0
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 28 7.9
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99... 28 7.9
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 31.1 bits (67), Expect = 0.85
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = -3
Query: 353 RAKFHSNGYGLAPVSLLNQSNETQTK--RLVQQYDELKAE----GIPEDEIIEKAAQAV- 195
R + NG L+ V L+ SNE TK L+Q++DE+K I +++ + + A +
Sbjct: 108 RKRHQVNGEHLSEVGLVPVSNELATKARELIQRFDEMKVYYKYFSISDNDGVRRTAPGIE 167
Query: 194 AVERHSYAAQKLNVTPKNPD 135
V SY K ++ + D
Sbjct: 168 CVRPTSYFVVKESIVGRESD 187
>02_02_0667 +
12765759-12765787,12766644-12766732,12766967-12767065,
12769131-12769304,12769376-12769590,12769746-12769835,
12770744-12770905
Length = 285
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 516 GKYCTNSFQSATGHVKKFFLKLLARLIYV 602
G C +F S G+ +KFFLK+ A YV
Sbjct: 71 GTVCNLNFSSLLGYREKFFLKIYAAAFYV 99
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 551 SSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVV 393
+SRL R+ + L M P R WFD+YK I P+ P L++
Sbjct: 146 ASRLHRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKI--PQVTCPVLII 196
>07_01_0355 + 2597592-2598280,2599150-2599426
Length = 321
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 478 GFIAPRLRRPSTLVNIV 528
GFIA RLRRPSTL+ ++
Sbjct: 3 GFIAGRLRRPSTLLTVL 19
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 465 GSVIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFLKLLARLIYVS 605
GS + HCS + F S +CT + S + F L+ RL S
Sbjct: 61 GSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEERLFQCS 107
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 31 STTVSVVY*FYKAAPYLLLKIFFISASANTWAVTESGFLGVTF 159
S +SV+ FY + ++LL+ S WA TESG L VT+
Sbjct: 320 SNIISVIT-FYPFSAFILLRC----VSLQVWAATESGSLEVTY 357
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 278 KRLVQQYDELKAEGIPEDEIIEKAAQA--VAVERHSYAAQKLNVTPK 144
+R ++ YDE+K G D +EK + +A H A K N+ P+
Sbjct: 470 QRALEYYDEMKENGFASDPKLEKEFRTFLLANRDHWRGAGKYNIIPQ 516
>01_01_0863 -
6724200-6724414,6726300-6726576,6726976-6727145,
6727250-6727526
Length = 312
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 557 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY 414
+AS + R IF+ + L G + P+ FD Y F P+T P Y
Sbjct: 28 VASLSVRRYDAIFSFGDSLADTG-----NNPVVFDWYSIFDPVTRPPY 70
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 571 KNFLTWPVADWKELVQYLPELKVFLAEEQ*NLMTDPCGLMYTKLSLQS 428
+ L W DW E VQ +P L+ E L P GL+Y +L++
Sbjct: 899 QGMLRWASWDWDEHVQAMPALESLTVENS-KLNRLPPGLVYHTRALKA 945
>03_01_0128 +
995103-995174,996500-996606,996909-997041,997127-997270,
997589-997747,997865-997938,998024-998099,998476-998531,
998651-998738,998824-998964,999057-999206,999320-999476,
1001183-1001773,1002673-1003532
Length = 935
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = -3
Query: 290 ETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVTPKNPDSVTAQVLA 111
E ++ ++ Y L +E + +EKA+Q VA + Q + + PK ++ L
Sbjct: 277 EDGSREKLEPYSGLSSEESYQSRELEKASQQVAKHLYDSKVQPITLIPKQVGNMYTASLY 336
Query: 110 EADIKNIFNNK 78
A + ++ +NK
Sbjct: 337 AA-LASVMHNK 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,365
Number of Sequences: 37544
Number of extensions: 291753
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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