Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e07r
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42782| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)                    31   0.65 
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)                 30   2.0  
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   30   2.0  
SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)                   29   4.6  
SB_28907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)                    29   4.6  
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)                   29   4.6  
SB_51753| Best HMM Match : rve (HMM E-Value=8.7e-30)                   29   4.6  
SB_46176| Best HMM Match : rve (HMM E-Value=8.7e-30)                   29   4.6  
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)                29   4.6  
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  29   4.6  
SB_40699| Best HMM Match : HSA (HMM E-Value=3.4)                       28   6.0  
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                28   6.0  
SB_22797| Best HMM Match : WHEP-TRS (HMM E-Value=3.6)                  28   6.0  
SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23)                   28   8.0  
SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_42782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 28/69 (40%), Positives = 37/69 (53%)
 Frame = -3

Query: 557 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKEIRP 378
           M  SR  R GT+ +RV  LL  GA+    +P+W++V +AFPPI E K  R       +  
Sbjct: 1   MTGSRHLR-GTVLSRVRNLLRSGALTR--KPVWYEVVEAFPPIVETKINR-RAESGRVAK 56

Query: 377 ILYKEDVLR 351
           I Y ED  R
Sbjct: 57  IEYPEDFFR 65


>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
          Length = 351

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -3

Query: 407 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P++VV +  P L  E+ L A F  NG    PV+ L+ S+  Q +R VQ   E
Sbjct: 91  PDVVVSDNGPNLISEE-LSAFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 141


>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
          Length = 732

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 407 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P++VV +  P L  E+ L   F  NG    PV+ L+ S+  Q +R VQ   E
Sbjct: 646 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 696


>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1829

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 407  PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
            P++VV +  P L  E+ L   F  NG    PV+ L+ S+  Q +R VQ   E
Sbjct: 1569 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 1619


>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 407  PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
            P++VV +  P L  E+ L   F  NG    PV+ L+ S+  Q +R VQ   E
Sbjct: 1037 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 1087


>SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)
          Length = 385

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 407 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P++VV +  P L  E+ L   F  NG    PV+ ++ S+  Q +R VQ   E
Sbjct: 131 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 181


>SB_28907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = -1

Query: 661 IPSLDLIKKSKKRLFVCISETYINRANNFRKNFLTWPVADWKELVQYLPELKVF 500
           + S+ ++KK  +++ +CI    +N+A  F++N    PV D  +L+  L   K+F
Sbjct: 460 VSSMVVVKKPNEKIRLCIDPKPLNKA--FKRNRYPLPVID--DLLPQLTNAKMF 509


>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 1280

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 407  PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
            P++VV +  P L  E+ L   F  NG    PV+ ++ S+  Q +R VQ   E
Sbjct: 880  PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 930


>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 682

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 407 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P++VV +  P L  E+ L   F  NG    PV+ ++ S+  Q +R VQ   E
Sbjct: 422 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 472


>SB_51753| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 407 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P++VV +  P L  E+ L   F  NG    PV+ ++ S+  Q +R VQ   E
Sbjct: 246 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 296


>SB_46176| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 407 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P++VV +  P L  E+ L   F  NG    PV+ ++ S+  Q +R VQ   E
Sbjct: 246 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 296


>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 407 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P++VV +  P L  E+ L   F  NG    PV+ ++ S+  Q +R VQ   E
Sbjct: 840 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 890


>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
          Length = 517

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -3

Query: 296 SNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVTPKNPDSVTAQV 117
           S E +T + V   + +      EDE++ K+ +   +ER+  +  K+       D  ++Q+
Sbjct: 183 SKEARTSQTVSTSNSVNPN--TEDELVVKSIEQTGIERNDDSVGKMASNEATKDPKSSQI 240

Query: 116 LAEADIK 96
           LA +  K
Sbjct: 241 LAASSDK 247


>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 598 YINRANNFRKNFLTWPVADWKELVQYLP 515
           YI R  +FR+ F  W +  W+  V  LP
Sbjct: 220 YIFRMKDFRQTFFRWLIKCWRRSVPVLP 247


>SB_40699| Best HMM Match : HSA (HMM E-Value=3.4)
          Length = 221

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 422 PKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 252
           P+ AR  L  + +   L    ++RA      +   PV L+N+S   + K L Q+Y E
Sbjct: 122 PRSARAKLQSRSLEGFLIDGTLVRAVM-MRIFSTVPVKLVNESTTIKGKALSQEYKE 177


>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = -3

Query: 398  VVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEI 219
            V +EI+P   K   L   FH +   L  +    ++ E + +RL +QYD+   E     E 
Sbjct: 1327 VAREIKPKREKVARLERNFHLSKRELEKIEKELKALEEELERLGKQYDDAMREKSSLQE- 1385

Query: 218  IEKAAQAVAVERHSYAAQKL 159
                 +A  +ER   AA KL
Sbjct: 1386 -----EAEIMERRLIAADKL 1400


>SB_22797| Best HMM Match : WHEP-TRS (HMM E-Value=3.6)
          Length = 117

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 299 QSNETQTKRLVQQYD---ELKAEGIPEDEIIEKAAQAVAVERHSYAAQ 165
           + NE + +R VQ+Y    +LK +   E+EI+    Q +   +HS  A+
Sbjct: 13  KENEAKRRRAVQKYQTELKLKDQKSKEEEILAAELQQLKARKHSLEAK 60


>SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 563 LNMASSRLERIGTIF-TRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARP 405
           L  ++ RL   GT + T ++ ++ RG + PD      + YKA PP      ARP
Sbjct: 738 LGYSNERLSDPGTFYPTLLKNIVIRGILPPDYPITERETYKAQPPNPPEIPARP 791


>SB_52467| Best HMM Match : UCH (HMM E-Value=2.6e-23)
          Length = 422

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 260 YDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVTPKNPDSVTAQVLAE 108
           YD+     I E++I+ KAA  +  +R       L  + K  DS T + ++E
Sbjct: 352 YDDSSVSQINEEQIVSKAAYVLFYKRRCPHGNGLKESEKGVDSGTDERMSE 402


>SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 545 RLERIGTIF-TRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARP 405
           RL   GT + T +E ++ RG + PD      + YKA PP      ARP
Sbjct: 174 RLSDPGTFYPTLLENIVIRGILPPDYPITERETYKAKPPNPPKIPARP 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,038
Number of Sequences: 59808
Number of extensions: 363368
Number of successful extensions: 963
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)