Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e07f
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.6
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 3.6
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 8.3
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 8.3
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 8.3
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 8.3
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 8.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.3
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 25 8.3
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 82 YINRANNFRK--NFLTWPVADWKELVQYLPELKVFLAEEQ*NLMTDPCGLMYTKLSLQSP 255
++NR + NF + + KEL+ + P+++VFL P YT + + P
Sbjct: 101 FVNRHTGSKPQPNFYSSSESSEKELIWFQPKMRVFLQSLSNMSYLSPSKFRYTTVYSKQP 160
Query: 256 N 258
N
Sbjct: 161 N 161
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 275 RTCIFRFGDWRESFVYIKPQGSVIRFHCSSAKKTFNS 165
+TC+F +S + I P GSV+ + C AKK +S
Sbjct: 863 KTCLFCHKRLGKSVISIFPDGSVVHYGC--AKKYVSS 897
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 366 VSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLN 524
+S N N++Q K L D +GIP E +EK A+++ E + ++KL+
Sbjct: 1 MSTKNALNDSQIKLLNSLNDN---KGIPSTEFVEKFAESL-YETQNDGSKKLS 49
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 8.3
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Frame = +3
Query: 168 VEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSN 347
VE ++ GA P D LW + Y+ + V++ ++Y+ + S
Sbjct: 419 VENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQ----LVYRVN----SAQST 470
Query: 348 GYGLAPVSL-LNQSNETQTKRLVQ---QYDELKAEGIPE----DEIIEKAAQAVAVERHS 503
GL PVSL N LV+ QY L A+ + E D I + Q++AV+
Sbjct: 471 AAGLGPVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYDNISDAEIQSLAVQEEK 530
Query: 504 YAAQK 518
Y +++
Sbjct: 531 YESKQ 535
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 281 KIRTCIFRFGDWRESFVYIKPQGSVIR-FHCSSAKKTFNSGKYCTNSFQSATGH 123
++ +F+ G S +I VI+ S+K+ FN GKY T + + H
Sbjct: 931 QLSDALFQLGYTTVSLGFIMQNLKVIKGLFSKSSKEHFNGGKYITWRLFAVSAH 984
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 382 KVMKLKQNVLYSNTMN*KQKAFLKMKSLR 468
K++ LK + Y T+ Q+AFL ++SLR
Sbjct: 232 KILDLKADRAYLGTILHPQQAFLLLRSLR 260
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 501 SYAAQKLNVTPKNPDSVTAQ 560
S+ LNVTPKN S+T Q
Sbjct: 139 SFGCDLLNVTPKNIVSITEQ 158
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFLNDFIF 450
IQ + +I + FD + L +NDF+F
Sbjct: 1597 IQIITNITLDFDSFVLRTTVNDFLF 1621
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 209 VIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFL--KLLARLIYVSLMQTNNLFLDFFI 36
V FH + +FN ++ F +A+ F A++ + L + N+L L FF+
Sbjct: 111 VHHFHFTVFINSFNIHRFLIAGFTAASKFFSDVFYTNSRYAKVGGIPLHELNHLELSFFV 170
Query: 35 KSKLGIFI 12
+ +FI
Sbjct: 171 FNDFNLFI 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,683
Number of Sequences: 5004
Number of extensions: 44952
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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