Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e07f
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0367 - 16840732-16843428,16844425-16844760 31 0.69
02_02_0667 + 12765759-12765787,12766644-12766732,12766967-127670... 30 1.2
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 29 2.1
07_01_0355 + 2597592-2598280,2599150-2599426 29 2.8
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 2.8
08_01_1032 + 10447474-10448030,10448784-10449813 28 4.9
01_01_0863 - 6724200-6724414,6726300-6726576,6726976-6727145,672... 28 4.9
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 28 6.5
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 27 8.5
03_02_0419 - 8296314-8296448,8296546-8296711,8296799-8296902,829... 27 8.5
01_05_0786 + 25207519-25207651,25207766-25207862,25208290-25208413 27 8.5
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 31.1 bits (67), Expect = 0.69
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +3
Query: 327 RAKFHSNGYGLAPVSLLNQSNETQTK--RLVQQYDELKAE----GIPEDEIIEKAAQAV- 485
R + NG L+ V L+ SNE TK L+Q++DE+K I +++ + + A +
Sbjct: 108 RKRHQVNGEHLSEVGLVPVSNELATKARELIQRFDEMKVYYKYFSISDNDGVRRTAPGIE 167
Query: 486 AVERHSYAAQKLNVTPKNPD 545
V SY K ++ + D
Sbjct: 168 CVRPTSYFVVKESIVGRESD 187
>02_02_0667 +
12765759-12765787,12766644-12766732,12766967-12767065,
12769131-12769304,12769376-12769590,12769746-12769835,
12770744-12770905
Length = 285
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 164 GKYCTNSFQSATGHVKKFFLKLLARLIYV 78
G C +F S G+ +KFFLK+ A YV
Sbjct: 71 GTVCNLNFSSLLGYREKFFLKIYAAAFYV 99
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 129 SSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVV 287
+SRL R+ + L M P R WFD+YK I P+ P L++
Sbjct: 146 ASRLHRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKI--PQVTCPVLII 196
>07_01_0355 + 2597592-2598280,2599150-2599426
Length = 321
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -3
Query: 202 GFIAPRLRRPSTLVNIV 152
GFIA RLRRPSTL+ ++
Sbjct: 3 GFIAGRLRRPSTLLTVL 19
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 215 GSVIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFLKLLARLIYVS 75
GS + HCS + F S +CT + S + F L+ RL S
Sbjct: 61 GSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEERLFQCS 107
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 402 KRLVQQYDELKAEGIPEDEIIEKAAQA--VAVERHSYAAQKLNVTPK 536
+R ++ YDE+K G D +EK + +A H A K N+ P+
Sbjct: 470 QRALEYYDEMKENGFASDPKLEKEFRTFLLANRDHWRGAGKYNIIPQ 516
>01_01_0863 -
6724200-6724414,6726300-6726576,6726976-6727145,
6727250-6727526
Length = 312
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 123 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY 266
+AS + R IF+ + L G + P+ FD Y F P+T P Y
Sbjct: 28 VASLSVRRYDAIFSFGDSLADTG-----NNPVVFDWYSIFDPVTRPPY 70
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 109 KNFLTWPVADWKELVQYLPELKVFLAEEQ*NLMTDPCGLMYTKLSLQS 252
+ L W DW E VQ +P L+ E L P GL+Y +L++
Sbjct: 899 QGMLRWASWDWDEHVQAMPALESLTVENS-KLNRLPPGLVYHTRALKA 945
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 261 KYARPNLVVKEIRPILYKEDVLRAKFHSNGYGLAPV 368
K A+P+L VK+I PIL K V+ N P+
Sbjct: 257 KEAKPSLYVKKILPILLKNRVVHLVGFGNRLSFDPI 292
>03_02_0419 -
8296314-8296448,8296546-8296711,8296799-8296902,
8297000-8297176
Length = 193
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 258 PKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLN--QSNETQTKRLVQQYDEL 431
P AR ++ ++R +L + + RA H +A ++L + E KRL++ +L
Sbjct: 32 PHLARKSIATDDVRQLLTLDHLDRA-IHRAEQVIAEDNMLEAFEMIEMYCKRLIEHAAKL 90
Query: 432 KAEGIPEDEIIEKAAQAV 485
G DEI E AA +
Sbjct: 91 DKPGECTDEIREAAASVM 108
>01_05_0786 + 25207519-25207651,25207766-25207862,25208290-25208413
Length = 117
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 243 PPITEPKYARPNLVVKEIRPILYKEDVL 326
PP T P YA L E+R YK+D+L
Sbjct: 16 PPSTFPSYACKILSFDELRARAYKKDIL 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,634
Number of Sequences: 37544
Number of extensions: 245655
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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