Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e07f
(594 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000242-1|AAH00242.1| 190|Homo sapiens mitochondrial ribosomal... 91 4e-18
AF151896-1|AAD34133.1| 153|Homo sapiens CGI-138 protein protein. 90 5e-18
BC005149-1|AAH05149.1| 580|Homo sapiens mucolipin 1 protein. 30 7.1
AK222673-1|BAD96393.1| 580|Homo sapiens mucolipin 1 variant pro... 30 7.1
AK222653-1|BAD96373.1| 523|Homo sapiens dynein light chain-A va... 30 7.1
AK026102-1|BAB15360.1| 580|Homo sapiens protein ( Homo sapiens ... 30 7.1
AJ293970-1|CAC08215.1| 580|Homo sapiens mucolipidin protein. 30 7.1
AJ293659-1|CAC07813.1| 545|Homo sapiens mucolipidin protein. 30 7.1
AF305579-1|AAG42242.1| 581|Homo sapiens mucolipin 1 protein. 30 7.1
AF287270-1|AAG00798.1| 580|Homo sapiens mucolipin protein. 30 7.1
AF287269-1|AAG00797.1| 580|Homo sapiens mucolipin protein. 30 7.1
AF249319-1|AAG10422.1| 580|Homo sapiens mucolipidosis type IV p... 30 7.1
BX649189-1|CAE46207.1| 335|Homo sapiens hypothetical protein pr... 29 9.4
BC131620-1|AAI31621.1| 523|Homo sapiens dynein, cytoplasmic 1, ... 29 9.4
AK222573-1|BAD96293.1| 523|Homo sapiens dynein light chain-A va... 29 9.4
AB037766-1|BAA92583.1| 1532|Homo sapiens KIAA1345 protein protein. 29 9.4
>BC000242-1|AAH00242.1| 190|Homo sapiens mitochondrial ribosomal
protein S23 protein.
Length = 190
Score = 90.6 bits (215), Expect = 4e-18
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Frame = +3
Query: 123 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNL----VVK 290
MA SRLE +G+IF+R L+ G +K ++PLWFDVY AFPP+ EP + RP +
Sbjct: 1 MAGSRLETVGSIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58
Query: 291 EIRPILYKEDVLRAKFHS-NGYGLAPVSLLNQSNETQTKRLVQQYDELKAEG-IPEDEII 464
I+ I Y ED +RAKF+S G G L N + ++ +R V++Y EL+ G E+++
Sbjct: 59 PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLF 118
Query: 465 EKAAQAVAVE 494
+ +A+ E
Sbjct: 119 VETGKALLAE 128
>AF151896-1|AAD34133.1| 153|Homo sapiens CGI-138 protein protein.
Length = 153
Score = 90.2 bits (214), Expect = 5e-18
Identities = 62/155 (40%), Positives = 86/155 (55%), Gaps = 13/155 (8%)
Frame = +3
Query: 123 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNL----VVK 290
MA SRLE +G IF+R L+ G +K ++PLWFDVY AFPP+ EP + RP +
Sbjct: 1 MAGSRLETVGCIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58
Query: 291 EIRPILYKEDVLRAKFHS-NGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDE--I 461
I+ I Y ED +RAKF+S G G L N + ++ +R V++Y EL+ G ++E
Sbjct: 59 PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLF 118
Query: 462 IE--KAAQAVAVERHSYAAQKLN---VT-PKNPDS 548
+E KA A V Q LN VT P NP++
Sbjct: 119 VETGKALLAEGVILRRVGEQGLNTEVVTFPGNPNT 153
>BC005149-1|AAH05149.1| 580|Homo sapiens mucolipin 1 protein.
Length = 580
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 426 MRFCCCVAVIYLGYCFCGWI 445
>AK222673-1|BAD96393.1| 580|Homo sapiens mucolipin 1 variant
protein.
Length = 580
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 426 MRFCCCVAVIYLGYCFCGWI 445
>AK222653-1|BAD96373.1| 523|Homo sapiens dynein light chain-A
variant protein.
Length = 523
Score = 29.9 bits (64), Expect = 7.1
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 209 VIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFLKLLARLIYVSLMQTNNLFLDF-FIK 33
V+ C + Y F H++KF L+ A LIY S+ + N+ L + +I
Sbjct: 242 VVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLRYGAALIYTSVKENKNIDLVYKYIV 301
Query: 32 SKL 24
KL
Sbjct: 302 QKL 304
>AK026102-1|BAB15360.1| 580|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22449 fis, clone HRC09609. ).
Length = 580
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 426 MRFCCCVAVIYLGYCFCGWI 445
>AJ293970-1|CAC08215.1| 580|Homo sapiens mucolipidin protein.
Length = 580
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 426 MRFCCCVAVIYLGYCFCGWI 445
>AJ293659-1|CAC07813.1| 545|Homo sapiens mucolipidin protein.
Length = 545
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 391 MRFCCCVAVIYLGYCFCGWI 410
>AF305579-1|AAG42242.1| 581|Homo sapiens mucolipin 1 protein.
Length = 581
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 427 MRFCCCVAVIYLGYCFCGWI 446
>AF287270-1|AAG00798.1| 580|Homo sapiens mucolipin protein.
Length = 580
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 426 MRFCCCVAVIYLGYCFCGWI 445
>AF287269-1|AAG00797.1| 580|Homo sapiens mucolipin protein.
Length = 580
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 426 MRFCCCVAVIYLGYCFCGWI 445
>AF249319-1|AAG10422.1| 580|Homo sapiens mucolipidosis type IV
protein protein.
Length = 580
Score = 29.9 bits (64), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 524 IQFLCSIAVAFDGYCLCGFL 465
++F C +AV + GYC CG++
Sbjct: 426 MRFCCCVAVIYLGYCFCGWI 445
>BX649189-1|CAE46207.1| 335|Homo sapiens hypothetical protein
protein.
Length = 335
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 209 VIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFLKLLARLIYVSLMQTNNLFLDF-FIK 33
V+ C + Y F H++KF L+ A LIY S+ + N+ L + +I
Sbjct: 216 VVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIV 275
Query: 32 SKL 24
KL
Sbjct: 276 QKL 278
>BC131620-1|AAI31621.1| 523|Homo sapiens dynein, cytoplasmic 1,
light intermediate chain 1 protein.
Length = 523
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 209 VIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFLKLLARLIYVSLMQTNNLFLDF-FIK 33
V+ C + Y F H++KF L+ A LIY S+ + N+ L + +I
Sbjct: 242 VVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIV 301
Query: 32 SKL 24
KL
Sbjct: 302 QKL 304
>AK222573-1|BAD96293.1| 523|Homo sapiens dynein light chain-A
variant protein.
Length = 523
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 209 VIRFHCSSAKKTFNSGKYCTNSFQSATGHVKKFFLKLLARLIYVSLMQTNNLFLDF-FIK 33
V+ C + Y F H++KF L+ A LIY S+ + N+ L + +I
Sbjct: 242 VVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIV 301
Query: 32 SKL 24
KL
Sbjct: 302 QKL 304
>AB037766-1|BAA92583.1| 1532|Homo sapiens KIAA1345 protein protein.
Length = 1532
Score = 29.5 bits (63), Expect = 9.4
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 282 VVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKR-LVQQYDELKAEGIPEDE 458
V ++ L +V+ K H + + L Q E+ R L+ + L A+ I E+E
Sbjct: 912 VFQDYEKRLRDRNVIETKEHIDTHRAIVAKYLQQVRESVINRFLIAKQYFLLADMIVEEE 971
Query: 459 IIEKAAQAVAVERHSYAAQKLNVTPKNPDSVTAQVLAEADIK 584
+ + +++ + + + L K VTAQ L++ DIK
Sbjct: 972 VPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDGDIK 1013
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,767,727
Number of Sequences: 237096
Number of extensions: 1393299
Number of successful extensions: 3066
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3062
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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