Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e07f
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22176-6|CAA80139.1| 133|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AF067945-1|AAC17679.1| 312|Caenorhabditis elegans Serpentine re... 31 0.82
Z68317-5|CAA92689.2| 165|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 29 2.5
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 29 2.5
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 29 3.3
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 28 5.8
>Z22176-6|CAA80139.1| 133|Caenorhabditis elegans Hypothetical
protein ZK1098.7 protein.
Length = 133
Score = 78.6 bits (185), Expect = 3e-15
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Frame = +3
Query: 132 SRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY-ARPNLVVKEIRPIL 308
+R ER G IF+RV GL+ G + DRPLW+DVY + PP+T P + + + IR I
Sbjct: 6 TRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEPIRSIF 65
Query: 309 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEG--IPEDEIIE 467
Y+EDVLRAKF+ A + ++ S + +++ + +Y +K+E +D++ E
Sbjct: 66 YEEDVLRAKFYKTYRSTAGIQ-VDSSRTSVSQQFINEYKLVKSENAEATDDQLFE 119
>AF067945-1|AAC17679.1| 312|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 31 protein.
Length = 312
Score = 30.7 bits (66), Expect = 0.82
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -2
Query: 320 VFLV*DWSYFFDY--KIRTCIFRFGDWRESFVYIKPQGSVIRFHCSSAKKTFNSGKYCTN 147
VFL +W +F +Y K+ C F F W YI R S+ K + SG + +
Sbjct: 25 VFLTKNWKHFDNYFLKLYICQFFFNMWMYWNFYI-----TSRLPASTCKDCYLSGWFDSL 79
Query: 146 SFQSATGHVKKFFLKLLARLIYVSLMQTNNLFL 48
S S + KFF+ ++ M +NLFL
Sbjct: 80 SKDSGSMFPFKFFIFC---QYHLGFMSYSNLFL 109
>Z68317-5|CAA92689.2| 165|Caenorhabditis elegans Hypothetical
protein T01H3.5 protein.
Length = 165
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/95 (22%), Positives = 43/95 (45%)
Frame = +3
Query: 309 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVA 488
+K DVLR F YG++ + +LN+ ++ +L + + + I E+ EK +
Sbjct: 3 WKNDVLR--FSGFDYGVSKIRMLNEELHSECDQLSKSNESTSLKDITEEPKDEKLESIIE 60
Query: 489 VERHSYAAQKLNVTPKNPDSVTAQVLAEADIKNIF 593
++ + ++ N N A + E I+N +
Sbjct: 61 TAKNKESEKEENSHVFNDCEFDA--MTERKIENFY 93
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 29.1 bits (62), Expect = 2.5
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +3
Query: 210 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 386
R +W KA I + P + ++R + L+AK S L A ++
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386
Query: 387 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 530
N T T R + Y+ + EG P DEI+EK A +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 29.1 bits (62), Expect = 2.5
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +3
Query: 210 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 386
R +W KA I + P + ++R + L+AK S L A ++
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386
Query: 387 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 530
N T T R + Y+ + EG P DEI+EK A +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 381 QSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVE-RHSYAAQKLNVTPKNP 542
+ E + ++ + + EG+ E+EI+E + A++ E YA K + P P
Sbjct: 694 EEEEEEPNQIPMASEHIDIEGVDEEEIMEHSVNAISEEILFEYADDKRDDGPSTP 748
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 288 KEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 428
K +RP+ D L+ KF +N L V +NQ T +Q YD+
Sbjct: 42 KAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,105,445
Number of Sequences: 27780
Number of extensions: 244495
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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