Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e07f
(594 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.14
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.74
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.98
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 0.98
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 2.3
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 2.3
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 2.3
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 5.2
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 9.1
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 21 9.1
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.14
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 293 FFDYKIRTCIFRFGDW 246
FF Y ++TC+ + G W
Sbjct: 159 FFPYDVQTCVLKLGSW 174
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 288 KEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQ 383
K +RP++ DVLR L V+L NQ
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.6 bits (51), Expect = 0.74
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 293 FFDYKIRTCIFRFGDW 246
+F + +TCI +FG W
Sbjct: 157 YFPFDQQTCIMKFGSW 172
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.98
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -2
Query: 293 FFDYKIRTCIFRFGDW 246
+F + +TC+ +FG W
Sbjct: 159 YFPFDEQTCVLKFGSW 174
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 288 KEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQ 383
K +RP++ DVLR L V+L NQ
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 0.98
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -2
Query: 293 FFDYKIRTCIFRFGDW 246
+F + +TC+ +FG W
Sbjct: 155 YFPFDEQTCVMKFGSW 170
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 2.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 293 FFDYKIRTCIFRFGDW 246
+F + +TC +FG W
Sbjct: 151 YFPFDEQTCFMKFGSW 166
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.0 bits (47), Expect = 2.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = -2
Query: 293 FFDYKIRTCIFRFGDW 246
+F + +TC +FG W
Sbjct: 151 YFPFDQQTCFMKFGSW 166
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 2.3
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -2
Query: 293 FFDYKIRTCIFRFGDW 246
+F + ++CI +FG W
Sbjct: 164 YFPFDEQSCIMKFGSW 179
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -2
Query: 494 FDGYCLCGFLNDFIF 450
F YCL FLN ++
Sbjct: 145 FKAYCLFSFLNTIVY 159
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 484 TACAAFSMISSSGMPSAFNSSYCCT 410
T C FS S S +PS + + C T
Sbjct: 147 TTCLVFSSGSVSCVPSVKHVAKCAT 171
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.0 bits (42), Expect = 9.1
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 560 LGCN--GIRIFRCNIQFLCSIAVAFDGYCLCGFLNDFI 453
+GC G RI R + SIAV G G+L FI
Sbjct: 215 IGCLTLGRRILRLDAIDEASIAVGASGNVFAGYLLVFI 252
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,452
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -