Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e07f
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    31   0.58 
At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containi...    29   1.8  
At1g10490.1 68414.m01181 expressed protein contains Pfam profile...    29   2.3  
At5g55860.1 68418.m06963 expressed protein contains Pfam profile...    29   3.1  
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ...    28   5.4  

>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 76  ETYINRANNFRKNFLTWPVADWKELVQYLPELKV 177
           E  + R N FRKN L  P++ W+EL      +KV
Sbjct: 481 ERGVPRYNEFRKNLLMSPISKWEELTDDEEAIKV 514


>At1g55890.1 68414.m06410 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 398

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 372 LLNQSNETQTKRLVQQYDELKAEGIPED 455
           LL  +NE ++K LV  + ELKA G+  D
Sbjct: 257 LLGLANEAKSKELVNLFGELKASGLKPD 284


>At1g10490.1 68414.m01181 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1028

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +3

Query: 300 PILYKEDVLRAKFHSN----GYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIE 467
           P L    ++R   H N    GYG A V LL +  E Q   + +  DEL+ E  P   + E
Sbjct: 609 PKLSGARIVRIAVHPNAMKMGYGSAAVELLTRYFEGQLASISEGDDELEVEPSPV-RVTE 667

Query: 468 KAAQAVAVE 494
            AA+   +E
Sbjct: 668 AAAKVSLLE 676


>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 649

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 357 LAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVER--HSYAAQKLNVT 530
           LA V  +  S     K+L    +E+K      +E ++KAA A A ++       +     
Sbjct: 507 LAQVEAVRASENETLKKLETTQEEIKKLKTATEEALKKAAMADAAKKAVEGELRRWRERD 566

Query: 531 PKNPDSVTAQVLAEADIK 584
            K  +    ++LAEA++K
Sbjct: 567 QKKAEEAATRILAEAEMK 584


>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
           3-methyl-2-oxobutanoate dehydrogenase, putative /
           branched-chain alpha-keto acid dehydrogenase E1 alpha
           subunit, putative similar to branched-chain alpha-keto
           acid dehydrogenase E1-alpha subunit [Gallus gallus]
           GI:12964598; contains Pfam profile PF00676:
           Dehydrogenase E1 component
          Length = 472

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 297 RPILYKEDVLRAKFHSNGYGLAPVSLLNQSN--ETQTKRLVQQYDELKAE 440
           RPI Y    L +  + + +G    SL ++S   ETQ   LVQQ DE+ A+
Sbjct: 33  RPIFYTTSQLSSTAYLSPFG----SLRHESTAVETQADHLVQQIDEVDAQ 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,299,818
Number of Sequences: 28952
Number of extensions: 219933
Number of successful extensions: 716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)