Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e05f
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 222 1e-58
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 217 3e-57
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 217 3e-57
At2g31890.1 68415.m03896 expressed protein 28 3.7
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 28 3.7
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 28 4.9
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 27 6.5
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 27 6.5
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 8.6
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 8.6
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 222 bits (542), Expect = 1e-58
Identities = 107/145 (73%), Positives = 127/145 (87%), Gaps = 1/145 (0%)
Frame = +1
Query: 127 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 303
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 304 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 483
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120
Query: 484 SMARYLSGSVKEILGTAQSVGCTVE 558
S+A+ LSG+VKEILGT SVGCTV+
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVD 145
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 217 bits (531), Expect = 3e-57
Identities = 104/145 (71%), Positives = 126/145 (86%), Gaps = 1/145 (0%)
Frame = +1
Query: 127 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 303
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 304 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 483
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 484 SMARYLSGSVKEILGTAQSVGCTVE 558
S+A+ LSG+V+EILGT SVGCTV+
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVD 145
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 217 bits (531), Expect = 3e-57
Identities = 104/145 (71%), Positives = 126/145 (86%), Gaps = 1/145 (0%)
Frame = +1
Query: 127 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 303
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 304 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 483
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 484 SMARYLSGSVKEILGTAQSVGCTVE 558
S+A+ LSG+V+EILGT SVGCTV+
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVD 145
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 385 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 492
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 470 IFAMPITSSREMLPLCLIFFCFL 402
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -1
Query: 506 PERYRAIDLFLMIFAMPITSSREMLPLCLIFFCFLRSRGGSLRA 375
P R+ ++ + I + ++ +L LC+++ C+ + R S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 184 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 327
GE+ SSL P G P VG DDIA S W G+ + Q+T R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 100 IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 273
++ N + K+PP+ PN ++ N + GE+ +T + + L +S + I
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222
Query: 274 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 369
+WKGL+ +L +Q + +PSA L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 184 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 282
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 184 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 282
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,161
Number of Sequences: 28952
Number of extensions: 272926
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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