Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e04r
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 30 0.21
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 28 1.1
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 2.6
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 4.5
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 4.5
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 26 4.5
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 5.9
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 5.9
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 7.8
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 25 7.8
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 25 7.8
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 7.8
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 25 7.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 30.3 bits (65), Expect = 0.21
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = -3
Query: 341 QADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVTV 162
+ DADG+G + E+L + KD ++ + F++ D +G + V E V
Sbjct: 56 EVDADGNGTIDFTEFLTMMARKMKDTDNEEE-----VREAFKVFDKDGNGYITVEELTHV 110
Query: 161 HESFG--LNKDESTEAFKKL-AKGKDSISWADFQEL 63
S G L+++E + ++ G I++ +F +
Sbjct: 111 LTSLGERLSQEEVADMIREADTDGDGVINYEEFSRV 146
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 7 RRCSYRDTSGSSLLKYSFHNSWKSAQEIESLPLASFLKASV 129
RR S+R G S L+ S +S Q ++S LA F+K SV
Sbjct: 72 RRISFRTLPGDSELEVFSSISNESKQSLQSQLLACFVKESV 112
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 137 DESTEAFKKLAKGKDSISWADFQELWKEY 51
+E+++ KL K KD+ +ELW+E+
Sbjct: 172 EEASQISNKLEKEKDATGSKSIEELWEEH 200
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 145 SIRTKAPRPLKNWLKVKTQSLGQISRNCGRSISAATTRMYP 23
S R + R + LKV S+G++ IS A +R+ P
Sbjct: 78 SARKRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKP 118
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 305 DEWLALWDEYAKD--PAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVTVHESF 150
DEW+AL+D ++ A K Q KS F + N + DVN+ ++ +F
Sbjct: 712 DEWVALYDRLIRNCIKAHNKQQQRRSIKSFFSC-ITPNKPTKDVNDILSEKSAF 764
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 191 SVDVNEYVTVHESFGLNKD--ESTEAFKKLAKGKDS 90
SVD+++Y+ H L+KD + T++F + G+ S
Sbjct: 26 SVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEIS 61
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -3
Query: 170 VTVHESFGLNKDESTEAFKKLAKGKDSISWADFQELWKEYFSSD 39
V + E+F N + + E K+L K SW W SD
Sbjct: 432 VDLDENFDFNVNVTNEDAKQLKKSVIGSSWTTVNNDWNSVSKSD 475
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 401 SPTYDILQESMIAIWLGLQKQADADGDGKVTQDEWLAL 288
S + +L+E + L L D+ GDG VT+DE +++
Sbjct: 712 STSVPVLEELQLRNKLFLTLLEDSIGDGDVTEDEKISI 749
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 438 GSQFKVLFFYDSTLIGVKEYGEDMEQFLFSDF 533
G LFF+D I EYG+ + + F F
Sbjct: 149 GESLPPLFFHDDECISTIEYGKQITRDRFDPF 180
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 7.8
Identities = 20/85 (23%), Positives = 35/85 (41%)
Frame = -3
Query: 344 KQADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVT 165
K + G+G + + L D K+ A+ + S + D N GSV +
Sbjct: 255 KNMKSPGEGDLDSASQIELHDFKKKESLTAEFTTS--SPSTASLSDKKNPGSVHIRPNNE 312
Query: 164 VHESFGLNKDESTEAFKKLAKGKDS 90
V S ++ ST + + +GK+S
Sbjct: 313 VAPSSAPSRAPSTTSVESNTEGKES 337
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 415 PLSLAMFWAASSKSCFSTTPLLSESKNT 498
PLS A+ S SC+S T +L S+N+
Sbjct: 9 PLSRAITRGISQFSCYSNTLVLRSSRNS 36
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 7.8
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +3
Query: 306 LSNFSVSISVGLFLQSQPDGDHAFLQDVVGGASRGPPSEFGDV---LGSQFKVLFFYDST 476
LS+ S S + +QP L+++V S G PS+F D G+ + L + T
Sbjct: 79 LSDISPSFTSSANSINQPYNYSGSLENLVPTPSAGTPSQFMDAQNPYGAVYNALSQFSET 138
Query: 477 LIGVKEYGEDME 512
+ Y +D E
Sbjct: 139 EPKMPSYMDDEE 150
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 4 YRRCSYRDTSGSSLLKYSFHN-SWKSAQEI 90
Y++CSYR+ +G ++ +N SW + +
Sbjct: 24 YKKCSYRNFNGLLQARFQSNNLSWSNRNRV 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,717
Number of Sequences: 5004
Number of extensions: 56310
Number of successful extensions: 191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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