Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e04r
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41) 41 6e-04
SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 30 1.2
SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 30 1.5
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 2.0
SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06) 29 2.7
SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 29 3.5
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 29 3.5
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 28 4.7
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021) 28 4.7
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 28 4.7
SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11) 28 4.7
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_9506| Best HMM Match : DUF1304 (HMM E-Value=4.2) 28 6.2
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 28 6.2
SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047) 27 8.2
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 27 8.2
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 27 8.2
SB_16922| Best HMM Match : DUF1647 (HMM E-Value=2e-07) 27 8.2
SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52) 27 8.2
SB_10943| Best HMM Match : efhand (HMM E-Value=6.4e-07) 27 8.2
>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
Length = 153
Score = 41.1 bits (92), Expect = 6e-04
Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Frame = -3
Query: 491 FDSDKSGVVEKQDFELAAQNIAKLRGWAPGSPTYDILQESMIAIWLGLQKQADADGDGKV 312
FD D SG + ++ E+ +++ + +P+ + LQ+ + ++ DADG+G+V
Sbjct: 9 FDKDGSGTISNEELEVVMKSLGQ-------NPSDEELQQMI--------QEVDADGNGEV 53
Query: 311 TQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVTVHESFG--LNK 138
+E+LA+ + + A + + F++ D + DGS+ E +V S G L+
Sbjct: 54 DFEEFLAMMKKQMQHRDAEAE-----MREAFRVFDRNGDGSISEWELRSVMASLGEKLSD 108
Query: 137 DESTEAFKKL-AKGKDSISWADFQELWKE 54
DE E ++ G I++ +F ++ +E
Sbjct: 109 DEIKEMMREADLDGDGVINFQEFVQMVRE 137
>SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 33.9 bits (74), Expect = 0.094
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Frame = -3
Query: 344 KQADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNE--Y 171
KQAD DG G + E++ L +K+ D + F + D +G + E +
Sbjct: 58 KQADKDGSGDIDLPEFIELMASKSKNDTTESD-----LREAFSLFDKDGNGLISAQEMKF 112
Query: 170 VTVHESFGLNKDESTEAFKKL-AKGKDSISWADFQELWKEYFSSDD 36
V F + + E+ E K+ G I++ +F+ + + + D
Sbjct: 113 VFTCMGFNITEKEAVELVKQADMDGDGHINYEEFKNAFMSFDKNVD 158
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 344 KQADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNE--Y 171
KQAD DG G + E++ L +K+ D + F + D +G + E +
Sbjct: 187 KQADKDGSGDIDLPEFIELMASKSKNDTTESD-----LREAFSLFDKDGNGLISAQEMKF 241
Query: 170 VTVHESFGLNKDESTEAFKK 111
V F + + E+ E K+
Sbjct: 242 VLTCMGFNITEKEAVELVKQ 261
>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1580
Score = 30.7 bits (66), Expect = 0.88
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 335 DADGDGKVTQDEWLAL-WDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNE 174
D +GD +T DE+LAL E D AAA+ K F++ D + DG V ++E
Sbjct: 1466 DRNGDKIMTGDEFLALPPGEVDPDQAAAEKEYKEDRKREFKLMDKNGDGVVKLDE 1520
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = -3
Query: 275 AKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVTVHESFGLNKDESTEAFKKLAKGK 96
+K+ AA D + + ++ ++ S N +DVN VT+ E+ +N+D + E L K
Sbjct: 510 SKELAANGDTSSAMEPTVGDLEKSVNH-QIDVNAEVTLIENTNINRDNAEERLDDLQKNN 568
Query: 95 DSISW 81
+ S+
Sbjct: 569 KNGSY 573
>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = -3
Query: 335 DADGDGKVTQDEWLALW---DEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVT 165
D + DGKV+ +E+ E +D A K+ Q ++ F+ D + DG +D++EYVT
Sbjct: 604 DDNKDGKVSWEEFKKAHFTHTEGKEDDKATKE-QMAEDEAKFKYADVNGDGMLDLHEYVT 662
Query: 164 VHESFG 147
+ G
Sbjct: 663 FYHPGG 668
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = -3
Query: 350 LQKQADADGDGKVTQDEW-LALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNE 174
++ + D D DG VT+DE L L + K + S D + DG V E
Sbjct: 563 VKSEVDLDKDGFVTEDELRLRLLNTSRKH-------RKTEVNSTVTFHDDNKDGKVSWEE 615
Query: 173 YVTVHESFGLNKDESTEAFKKLAKGKDSISWAD 75
+ H + K++ +++A+ + +AD
Sbjct: 616 FKKAHFTHTEGKEDDKATKEQMAEDEAKFKYAD 648
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 245 QNLLCKSIFQIQDSSNDGSVDVNEYVTVHESFGLNKDESTEAFKKLAKGKD-SISWADFQ 69
+ +LCK +FQ D N+G V ++ + GL DE+ + D ++ DF
Sbjct: 383 RRILCKPLFQDFDKHNNGHVTRSQARQCLHNLGLTHDENEMKIIEARYSDDIGFNYIDFL 442
Query: 68 EL 63
EL
Sbjct: 443 EL 444
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -3
Query: 323 DGKVTQDEWLALWDEYA---KDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVTVHES 153
DG+ ++EW +LWD + +D +++ + K I+ ++ D + +++
Sbjct: 793 DGR--KEEWTSLWDYHKSKLEDSIMICEFEQDISKVNLLIEQNNRD-------LIALNQK 843
Query: 152 FGLNKDESTEAFKKLAKGKDSISWADFQELWKEYFS 45
FG+N +S ++ +S+ A + WK + S
Sbjct: 844 FGVNLLDSVTLLQESDAFLESVKIASMETRWKRFLS 879
>SB_52594| Best HMM Match : ShTK (HMM E-Value=1e-06)
Length = 324
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = -3
Query: 350 LQKQADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEY 171
++++ D D +T + + ++ AKDP +N++ +++ DSS + +
Sbjct: 52 IERKVDGLADQVITPKDSASAKNDSAKDPQIDDGSENVVTQTVADFADSSEAVGTESADD 111
Query: 170 VTVHESFGLNK 138
V VH G K
Sbjct: 112 VIVHVDSGNKK 122
>SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -3
Query: 209 DSSNDGSVDVNEYVTVHESFGLNKDESTEAFKKLAKGKDSISWADFQELWKEYFSSDDPD 30
D + D + N+ T E G ++D +T +KL + + + + + L KE+ S PD
Sbjct: 77 DEAADSDTNANDASTDDER-GKDEDPATNQKRKLRRNRTTFTPDQLEMLEKEFEKSHYPD 135
Query: 29 VS 24
V+
Sbjct: 136 VA 137
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 209 DSSNDGSVDVNEYVTV-HESFGLNKDESTEAFKKLAKGKDSISWADFQELWKEYFS 45
+S +DG+ D N+Y+ V + F E TE +L + S++ D L +EY++
Sbjct: 153 NSDDDGNDDTNDYIDVDYNVFSAYSQEMTEEEAELK--EPSVATEDVDTLPEEYYT 206
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -3
Query: 341 QADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVTV 162
Q D DG+G++T DE++ + ++ + + N + + D D S DV E ++
Sbjct: 465 QLDQDGNGRLTLDEFVLGFGKFLSGAESEDEQSNGFIEDQDNL-DGYQDPSSDVFENISS 523
Query: 161 HESFGLNKDESTEAFKKLAKGKDSISWA----DFQELWKEYFSSDDPDVSR 21
E +++ + G+D +S A ++LW+ +D V +
Sbjct: 524 EEGSPTVQEDPMFSEVVETVGEDVLSGALSKDQLRDLWESLQHNDSRAVQK 574
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 233 CKSIFQIQDSSNDGSVDVNE 174
CK +FQ D +NDG +D E
Sbjct: 43 CKGLFQAFDENNDGHIDFRE 62
>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
Length = 419
Score = 28.3 bits (60), Expect = 4.7
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = -1
Query: 454 TLNWLPRT--SPNSEGGPLEAPPTTSCKKA*SPSGW-DCRNKPTLMETEKLLRTNG*LFG 284
T++W P T P S E TT + S + + ++ ET+ +T
Sbjct: 74 TVSWAPITITKPQSTTKAPETQSTTESPETQSTTETPETQSTTESPETQSTTQTPETQST 133
Query: 283 TSTPRTQLQQKTGKIFCAKASSRSKTPAMMVQSMSTST*PCTSLLVSIR 137
T TP TQ +T + + +++P ++ ST+T P T R
Sbjct: 134 TETPETQSTTETPETQSTTDTPETQSPTQTPETQSTTTTPETQSTTDTR 182
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/83 (25%), Positives = 32/83 (38%)
Frame = +3
Query: 303 VLSNFSVSISVGLFLQSQPDGDHAFLQDVVGGASRGPPSEFGDVLGSQFKVLFFYDSTLI 482
V S +S G + PDG AF + G + P ++ + S Y +
Sbjct: 89 VASQYSHRAVAGARAKDLPDGGFAFSSSIDGLSDIPLPGDYVPPVSSNSSNCTLYTAANQ 148
Query: 483 GVKEYGEDMEQFLFSDFGHHFVR 551
+ + D+ FSDFG H R
Sbjct: 149 PEEGHLSDLPPNNFSDFGDHSER 171
>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
Length = 234
Score = 28.3 bits (60), Expect = 4.7
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 4/159 (2%)
Frame = -3
Query: 533 EVRKKKLLHVFTVFFDSDKSGVVEKQDFELAAQNIAKLRGWAPGSPTYDILQESMIAIWL 354
E K+KL + D +K G V Q+ E+ K + Y+ ++E++
Sbjct: 63 EESKQKLKIIVETKIDVNKDGKVSLQELEVWIDKQRK-------AFMYEAVEENI----- 110
Query: 353 GLQKQADADGDGKVTQDEW---LALWDEY-AKDPAAAKDWQNLLCKSIFQIQDSSNDGSV 186
K+ D DGDGK++ +E+ L +E+ + W + + D + DG +
Sbjct: 111 ---KKEDKDGDGKISWEEYKVVLITVEEFLGQYGDEVPGWVEKEREDFAKQFDKNKDGKL 167
Query: 185 DVNEYVTVHESFGLNKDESTEAFKKLAKGKDSISWADFQ 69
D E V K ES + K L G D + D Q
Sbjct: 168 DREE---VRAWVLPEKGESLDEAKHLIDGSDENADGDLQ 203
>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 182 VNEYVTVHESFGLNKDESTEAFKKLAKGKDSISWADFQE 66
V E V SFG+ KD+ E K+ A S+ ADF++
Sbjct: 193 VEEKVKKRRSFGIFKDKDKEKDKEKAGSVISLETADFEK 231
>SB_9506| Best HMM Match : DUF1304 (HMM E-Value=4.2)
Length = 185
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 403 PGAHPLSLAMFWAASSKSCFS 465
PG PL LA W +S+ SC S
Sbjct: 69 PGRRPLVLAAIWLSSTLSCIS 89
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 315 SYSGRMASSLGRVRQGPSCSKRLAKSSV 232
S GR ++GR+ G SCS R+ K S+
Sbjct: 196 SVYGRDVCTMGRMSYGASCSSRIIKGSM 223
>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = -3
Query: 320 GKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYV 168
GK++Q ++ ++ + K A+ + +F+ D +NDG++D NE++
Sbjct: 44 GKMSQSKFCEMYAKSYKTGDAS-----IFAGHVFRTFDKNNDGTIDFNEFI 89
>SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)
Length = 727
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 444 GCPEHRQTQRVGPWKPHLRHPARKHDRHLAGIAETSR 334
G P++R +RV HL A KH RH A ++R
Sbjct: 325 GVPDNRVRERVSAEFEHLISIAAKHPRHKASKENSNR 361
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 571 DLSRSLRRTKWCPKSEKRNCSMSSPYSLTPIRVES 467
D SR + W +E R S +SP+ + I +ES
Sbjct: 230 DASRRSSESGWASNNESRRSSQASPFPSSKIVIES 264
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 402 KPHLRHPARKHDRHLAGIAETSRR*WRRKSYSGRMASSLGRVRQGPSCSKRLAKSSVQKH 223
+PH ++KH H + + R SYS SS G R+ S S+ + KS KH
Sbjct: 155 RPHEEGSSKKHKSHHSSRQHGHSKSGRTSSYSS--DSSPGSGREKSSHSRSVHKSHSSKH 212
>SB_16922| Best HMM Match : DUF1647 (HMM E-Value=2e-07)
Length = 422
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -3
Query: 236 LCKSIFQIQDSSNDGSVDVNEYVTVHESFGLNKDESTEAFKKLAKGKDSISWADFQELW 60
L K IF + D++ +DV V + GLN +S + GK ++++ +F ++
Sbjct: 281 LLKDIFDLYDTTGSEKIDVGYLGQVLRAAGLNPTQSEVRKVERDFGKSAMAFDEFLPIY 339
>SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)
Length = 835
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 400 LPGAHPLSLAMFWAASSKSCFSTTPLLSESKNTVKTWSSFFFLTSDTIL 546
+P + ++ A+ WA + FS T L S+ T + S+F F+ S ++
Sbjct: 465 VPYDYSIAYALSWALIFQGIFSATYHLCPSRMTFQFDSAFMFIISGLVV 513
>SB_10943| Best HMM Match : efhand (HMM E-Value=6.4e-07)
Length = 154
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -3
Query: 236 LCKSIFQIQDSSNDGSVDVNEYVTVHESFGLNKDESTEAFKKLAKGKDSISWADFQELW 60
L K IF + D++ +DV V + GLN +S + GK ++++ +F ++
Sbjct: 13 LLKDIFDLYDTTGSEKIDVGYLGQVLRAAGLNPTQSEVRKVERDFGKSAMAFDEFLPIY 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,321,435
Number of Sequences: 59808
Number of extensions: 447936
Number of successful extensions: 1419
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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