Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e04f
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    28   0.050
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   0.82 
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   3.3  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   4.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 0.050
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 131 CPEHRQTQRVGPWKPHLRHPARKHDRHLAGIAETSRR*WRRKSYSGRMASSLGRVRQGPS 310
           CP  ++ +R+GP   HLR     H  H+ G  +   +    K++          V     
Sbjct: 293 CPNCQEAERLGPAGVHLR-KKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLF 351

Query: 311 CSKRLAKS-SVQKHL 352
           C KR  +S  +Q+HL
Sbjct: 352 CGKRFTRSDELQRHL 366


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 136 WAASSKSCFSTTPLLSESKNTVKTWSSFFFLTSDTI 29
           W +SS+   STT   +   N    +S+  +L+S T+
Sbjct: 235 WCSSSQPVLSTTNSTTNCYNNYPYYSNMDYLSSSTM 270


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 430 IRTKAPRPLKNWLKV 474
           +R KAP+P +NW  V
Sbjct: 14  LRFKAPQPPENWTGV 28


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 501 QELWKEYFSSDDPD 542
           Q++WKE  +  DPD
Sbjct: 93  QQMWKELTAKYDPD 106


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 266 LSNFSVSISVGLFLQSQPDGDHAFLQDV 183
           L +FSV +     LQ +P    AFL++V
Sbjct: 250 LMDFSVLVEACGVLQQEPHRRDAFLKEV 277


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 266 LSNFSVSISVGLFLQSQPDGDHAFLQDV 183
           L +FSV +     LQ +P    AFL++V
Sbjct: 250 LMDFSVLVEACGVLQQEPHRRDAFLKEV 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,256
Number of Sequences: 336
Number of extensions: 3294
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)