Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02r
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.9  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   5.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
 Frame = +1

Query: 541 GSVRPTPHTECVPDGALEKPSALTHSFIFP---RATSHSNMRPTG 666
           G V P PHT     G L  P +  +    P      S   + PTG
Sbjct: 74  GKVEPVPHTSSFNMGYLVSPYSYANGAAGPIPVSMASKMGLAPTG 118


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 372 LLSVIESHFNQVFHFDLSHVVHDELVVQQRAVLRPVDGRPER 497
           +L   +++ N  + F LS   +++L    +A +RPV   P+R
Sbjct: 35  MLPYPQNYINS-YLFSLSLAQNNQLFTHHKAPIRPVALPPKR 75


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 78  YCLNMSVIFEIFD*DNFCCYVSNRYD 1
           +CLN+  IF       +C Y +  YD
Sbjct: 319 FCLNILSIFTYVPMILYCVYTTATYD 344


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 78  YCLNMSVIFEIFD*DNFCCYVSNRYD 1
           +CLN+  IF       +C Y +  YD
Sbjct: 44  FCLNILSIFTYVPMILYCVYTTATYD 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,451
Number of Sequences: 336
Number of extensions: 3345
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)