Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02r
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    28   1.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   6.4  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    25   8.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   8.5  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 547 VRPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 660
           +RP PH    PD    K     H   FPR   H+  +P
Sbjct: 376 LRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKP 413



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 550 RPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 660
           RP PH    PD    K     H   FPR   H+  +P
Sbjct: 182 RPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKP 218



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 550 RPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 660
           RP PH    PD    K     H   FPR   H+  +P
Sbjct: 267 RPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTKP 303



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 550 RPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRP 660
           RP PH    PD    K     H   FPR   H+  +P
Sbjct: 294 RPIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKP 330


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 713 DMVSKSANYCCTTRNNPVGLMLLCEVALGNMKE 615
           D V++    CC      +G   L E  LGNM++
Sbjct: 603 DFVARRGELCCIVGKVGMGKSSLLEACLGNMQK 635


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 236 KKNFFLYFFCQLYPRKKITFIINIYDRSYSSGLK 135
           KK+F  +    L  RK  T ++N+  RS   G K
Sbjct: 159 KKSFSFFTSASLLHRKITTELVNVLQRSKDQGTK 192


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +1

Query: 424 ATSYTMNSLYSSVLFSALSTGVPSGT---MSPSGNSLFIFGSGSVRPTPHTECVPDGALE 594
           + +YT  S + + LF   S   P  T   ++  GN      S   RP P T   P G+L 
Sbjct: 111 SAAYTTYSSFPNALFDDFSPNNPLDTDPFLTSPGNKQNTVDS--FRPLPETPVSPGGSLV 168

Query: 595 KP 600
            P
Sbjct: 169 HP 170


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +1

Query: 454 SSVLFSALSTGVPSG-TMSPSGNSLFI----FGSGSVRPTPHTECVPDGALEKPSALTHS 618
           SS L +  S+ +PS  T+  S +SL +      S S  P P +  +        S +THS
Sbjct: 660 SSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHS 719

Query: 619 FIFPRATSHSNMRPTGL 669
            +   A S S+  PT +
Sbjct: 720 SLSLTAMSSSSAIPTSV 736


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +1

Query: 469 SALSTGVPSGTMSPSGNSLFIFGSGSVRPT-PHTECVPDGALEKPSALTHSFIFPRATSH 645
           S+++T  PS   + S  S   F   S+  T P        ++     LTHS++ P   SH
Sbjct: 274 SSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSH 333

Query: 646 SNMRPTG 666
                +G
Sbjct: 334 KYSLSSG 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,822
Number of Sequences: 5004
Number of extensions: 54329
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)