Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12e02r
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 126 2e-29
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 123 2e-28
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 113 1e-25
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 57 1e-08
11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971... 31 0.72
04_01_0229 - 2897484-2900402 28 6.7
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 28 8.9
>07_03_0061 + 12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 126 bits (304), Expect = 2e-29
Identities = 61/121 (50%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEGFSKAPSGTHSVWG 558
F KG+YFAD+VSKSA YC R NPVGLMLL EVALG+M E A K P G HS G
Sbjct: 823 FGKGLYFADLVSKSAQYCYVDRKNPVGLMLLSEVALGDMYELKKATSMDKPPRGKHSTKG 882
Query: 557 VGRTEPDPKMNKELPDGLIVPLGTPVDRA-ENSTLLYNEFIVYDVAQVKVKYLIEMRFDY 381
+G+T P + D ++VP G PV + + S L+YNE+IVY+ +QVK++YL+++RF +
Sbjct: 883 LGKTVPLESEFAKWRDDVVVPCGKPVPASIKTSELMYNEYIVYNTSQVKMQYLLKVRFHH 942
Query: 380 R 378
+
Sbjct: 943 K 943
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 123 bits (296), Expect = 2e-28
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAE-GFSKAPSGTHSVW 561
F KG+YFADM SKSANYCC + G+MLLCEVALG M E + + G P+G S
Sbjct: 479 FGKGVYFADMFSKSANYCCASEACKSGVMLLCEVALGEMNELLYGDFGADNLPNGKLSTK 538
Query: 560 GVGRTEPDPKMNKELPDGLIVPLGTPVDRAENSTLLYNEFIVYDVAQVKVKYLIEMRFDY 381
GVG+TEP+ +K DG+++PLG P E +L+YNE+IVY+V Q++++Y++ + F++
Sbjct: 539 GVGQTEPNIAESKITDDGMVIPLGKP----EKGSLMYNEYIVYNVDQIRMRYILNVNFNF 594
Query: 380 R 378
+
Sbjct: 595 K 595
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 113 bits (273), Expect = 1e-25
Identities = 57/117 (48%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAE-GFSKAPSGTHSVW 561
F KG+YFADM SKSANYC + G++LLCEVALG M E +NA+ + P G S
Sbjct: 537 FGKGVYFADMFSKSANYCYASEACRSGVLLLCEVALGEMNELLNADYDANNLPKGKLSTK 596
Query: 560 GVGRTEPDPKMNKELPDGLIVPLGTP-VDRAENSTLLYNEFIVYDVAQVKVKYLIEM 393
GVG+TEP+ +K DG++VPLG P + ++ +LLYNEFIVY+V Q++++ E+
Sbjct: 597 GVGQTEPNTAESKITDDGVVVPLGKPKAEPSKRGSLLYNEFIVYNVDQIRMRLSKEL 653
>02_04_0080 - 19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 57.2 bits (132), Expect = 1e-08
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Frame = -2
Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGN-MKECVNAEG---FSKAPSGTH 570
F K I +D +++A Y T + P G ++L +LG ++E G +
Sbjct: 708 FGKAIVCSDAAAEAALYGFTAVDRPEGYLVLAVASLGKEIQEITGTPGSEDVKRMEEKKM 767
Query: 569 SVWGVGRTEPDPKMNKELPDGLIVPLGTPVDRA-ENSTLLYNEFIVYDVAQVKVKYLIEM 393
V GVGR DP + DG+ VP G V ++ L YNE+ VYD QV + +L+ +
Sbjct: 768 GVKGVGRKTTDPSEHFTWRDGVTVPCGKLVPSTNKDGPLEYNEYAVYDPKQVSIAFLVGV 827
Query: 392 RFD 384
+++
Sbjct: 828 KYE 830
>11_06_0724 -
26696401-26696703,26696875-26697025,26697115-26697184,
26697526-26697736,26697928-26698085,26698684-26699500
Length = 569
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 367 CNYYL*SNLISIRYFTLT*ATSYTMNSLYSSVLFSALSTGVPSGTMSPSGNSLFIFGSGS 546
C ++L +++ + + + ++ YT NS+Y S L S LS+ + S +LF GS
Sbjct: 12 CFFFLPMPMVAAQPWMICGSSKYTANSIYQSNLDSLLSSSFLVVSGDSSSGALFAKGSRG 71
Query: 547 VRP 555
P
Sbjct: 72 AAP 74
>04_01_0229 - 2897484-2900402
Length = 972
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -2
Query: 725 IYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEGFSKAPSGTHSVWGVGRT 546
+ F S+ NY TT P G+M L L + N EG S + S G+G
Sbjct: 410 LQFCTATSEKRNYTTTTEEIPEGVMKLVFEELTRVILRTNMEGNSGTGNKDMSKEGIGLA 469
Query: 545 EPD 537
+ D
Sbjct: 470 KKD 472
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 728 GIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEGFSKA 585
G Y +++N C +NP L++ C +AL + C+ +EG S A
Sbjct: 629 GSYLNKESKQNSNQKCRL-SNPHALVVHCCLALATIAACLKSEGNSSA 675
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,163
Number of Sequences: 37544
Number of extensions: 329997
Number of successful extensions: 722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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