Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12e02r
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4467| Best HMM Match : PARP (HMM E-Value=0)                         74   1e-13
SB_2975| Best HMM Match : PARP (HMM E-Value=0)                         56   3e-08
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  41   0.001
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               31   1.3  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                30   1.7  
SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_10435| Best HMM Match : PRAI (HMM E-Value=1.7)                      29   5.2  
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)                  28   9.1  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_52852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)                  28   9.1  

>SB_4467| Best HMM Match : PARP (HMM E-Value=0)
          Length = 293

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = -2

Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAE-GFSKAPSGTHSVW 561
           F KGIYFADM SKSANYC  TR+   GL+LL EV+LG     + A+   +K P+G  SV 
Sbjct: 119 FGKGIYFADMSSKSANYCFATRSKNTGLVLLSEVSLGKSNVLLTADYNAAKLPAGHQSVK 178

Query: 560 GVGRTEPDPKMN 525
            +G+  PDP  N
Sbjct: 179 ALGKFAPDPTQN 190


>SB_2975| Best HMM Match : PARP (HMM E-Value=0)
          Length = 174

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = -2

Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEG 597
           F KGIYFADM SKSANYC  TR+   GL+LL EV+ G+ +   +A G
Sbjct: 119 FGKGIYFADMSSKSANYCFATRSKNTGLVLLSEVSDGDAQGAASALG 165


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -2

Query: 728 GIYFADMVSKSANYCCTTRNNPVGLMLLCEVALGNMKECVN-AEGFSKAPSGTHSVWGVG 552
           GIYFAD  S SA Y           ML+ +VALG  KE     +  ++ P G +SV GV 
Sbjct: 410 GIYFADRASTSAKYSSPGMLGS-RFMLVNKVALGKSKEYRKFTKDLTRPPDGYNSVIGVK 468

Query: 551 RTEPDPKMNKELP 513
            TE  P   K  P
Sbjct: 469 ATETQPSDFKVTP 481


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 535 GSGSVRPTPHTECVPDGALEKPSALTHSFIFPRATSHSNMRPT 663
           G  +  P   T CVPD   E P      F++P+ + H +  PT
Sbjct: 267 GHKTAFPRKITLCVPDNVTESPGVNVKKFMYPK-SRHDDKEPT 308


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 701 KSANYCCTTRNNPVGLMLLCEVALGNMKECVNAEGFSKAPS 579
           K   YCCT + +   L+  C  +   +++C ++EG +  PS
Sbjct: 287 KGKGYCCTEKGDKEALLNSCCDSKETIQDCCSSEGKNAEPS 327


>SB_18285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
 Frame = -2

Query: 737  FXKGIYFADMVSKSANY---------CCTTRNNPV----GLMLLCEVALGNMKECVNAEG 597
            F  GIYFA+  SKS  Y         C T ++         +LLC VALG      +A  
Sbjct: 1003 FGAGIYFAENSSKSNQYVYGIGGGSGCPTHKDRSCYSCERQLLLCRVALGKPFYQFSAVK 1062

Query: 596  FSKAPSGTHSVWG 558
             + AP G +SV G
Sbjct: 1063 MAHAPPGHNSVIG 1075


>SB_10435| Best HMM Match : PRAI (HMM E-Value=1.7)
          Length = 379

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 411 HFDLSHVVHDELVVQQRAVLRPVDGRPERHNESVGQFLIHFRVR 542
           H D+  ++ +EL  +   +  P+D   + HN+ V  ++I+  +R
Sbjct: 219 HDDVKRMIAEELTTKLVGMALPIDSVVDLHNDLVSDYIINNELR 262


>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 490 PSGTMSPSGNSLFIFGSGSVRPTPHTECVPDGALEKPSALTHSFIFP 630
           P+  ++P+     +  +    P PHT  +P  AL+KP+  T +  FP
Sbjct: 493 PAEVVTPNDAQDHLLTTSLHIPFPHTMRIPPLALQKPATSTTNVHFP 539


>SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)
          Length = 585

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 737 FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALG 627
           + +GIYFA   SKSA    T  +N    +L+C+V LG
Sbjct: 299 YGQGIYFATDSSKSAQGIYTKGSNK---LLVCQVLLG 332


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 737  FXKGIYFADMVSKSANYCCTTRNNPVGLMLLCEVALG 627
            + +GIYFA   SKSA    T  +N    +L+C+V LG
Sbjct: 1479 YGQGIYFATDSSKSAQGIYTKGSNK---LLVCQVLLG 1512


>SB_52852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 557 VGRTEPDPKMNKELPDGLIVPLG 489
           +G+T PDP       DG IVP G
Sbjct: 2   LGKTAPDPSATHTFEDGTIVPKG 24


>SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)
          Length = 419

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 614 CVNAEGFSKAPSGTHSVWGVG-RTEPDPK 531
           CV+A G+ +   GT++ W VG  TEP  K
Sbjct: 67  CVSAAGYDELVVGTYAGWVVGLTTEPQHK 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,904,630
Number of Sequences: 59808
Number of extensions: 395344
Number of successful extensions: 1146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)